Zinc in PDB 5opj: Beta-L-Arabinofuranosidase

The structure of Beta-L-Arabinofuranosidase, PDB code: 5opj was solved by A.Basle, A.S.Luis, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.54 / 2.05
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	96.210, 96.210, 187.840, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 20.7

The binding sites of Zinc atom in the Beta-L-Arabinofuranosidase (pdb code 5opj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Beta-L-Arabinofuranosidase, PDB code: 5opj:

Zinc binding site 1 out of 1 in the Beta-L-Arabinofuranosidase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Beta-L-Arabinofuranosidase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn902 b:30.1 occ:1.00 OE1 A:GLU339 2.0 27.7 1.0 SG A:CYS341 2.4 29.9 1.0 SG A:CYS416 2.4 28.4 1.0 SG A:CYS417 2.4 28.6 1.0 CD A:GLU339 3.1 27.3 1.0 CB A:CYS341 3.2 28.9 1.0 N A:CYS417 3.2 27.1 1.0 CB A:CYS416 3.2 26.8 1.0 CG A:GLU339 3.4 25.8 1.0 CB A:CYS417 3.5 28.0 1.0 CA A:CYS417 3.6 27.1 1.0 C A:CYS416 3.6 26.4 1.0 CA A:CYS416 4.0 26.6 1.0 N A:CYS341 4.0 26.2 1.0 OE2 A:GLU339 4.2 29.8 1.0 CA A:CYS341 4.2 28.5 1.0 CZ A:TYR395 4.4 28.6 1.0 O A:CYS416 4.4 27.2 1.0 C2' A:AHR901 4.5 30.1 1.0 CE2 A:TYR395 4.5 27.6 1.0 CE1 A:TYR395 4.6 28.9 1.0 N A:CYS416 4.7 25.3 1.0 OH A:TYR395 4.7 27.2 1.0 CD2 A:TYR395 4.7 28.0 1.0 O2' A:AHR901 4.8 29.1 1.0 ND2 A:ASN266 4.8 27.8 1.0 OG A:SER420 4.9 29.0 1.0 CD1 A:TYR395 4.9 27.5 1.0 CB A:GLU339 4.9 25.5 1.0 O A:HOH1287 5.0 32.9 1.0 CG A:TYR395 5.0 28.2 1.0

A.S.Luis, J.Briggs, X.Zhang, B.Farnell, D.Ndeh, A.Labourel, A.Basle, A.Cartmell, N.Terrapon, K.Stott, E.C.Lowe, R.Mclean, K.Shearer, J.Schuckel, I.Venditto, M.C.Ralet, B.Henrissat, E.C.Martens, S.C.Mosimann, D.W.Abbott, H.J.Gilbert. Dietary Pectic Glycans Are Degraded By Coordinated Enzyme Pathways in Human Colonic Bacteroides. Nat Microbiol V. 3 210 2018.
ISSN: ESSN 2058-5276
PubMed: 29255254
DOI: 10.1038/S41564-017-0079-1