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Zinc in PDB 5lme: Specific-Dna Binding Activity of the Cross-Brace Zinc Finger Motif of the Piggybac Transposase

Zinc Binding Sites:

The binding sites of Zinc atom in the Specific-Dna Binding Activity of the Cross-Brace Zinc Finger Motif of the Piggybac Transposase (pdb code 5lme). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Specific-Dna Binding Activity of the Cross-Brace Zinc Finger Motif of the Piggybac Transposase, PDB code: 5lme:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5lme

Go back to Zinc Binding Sites List in 5lme
Zinc binding site 1 out of 2 in the Specific-Dna Binding Activity of the Cross-Brace Zinc Finger Motif of the Piggybac Transposase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Specific-Dna Binding Activity of the Cross-Brace Zinc Finger Motif of the Piggybac Transposase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
ND1 A:HIS34 2.0 0.0 1.0
SG A:CYS11 2.3 0.0 1.0
SG A:CYS8 2.3 0.0 1.0
SG A:CYS31 2.3 0.0 1.0
HB2 A:HIS34 2.8 0.0 1.0
CE1 A:HIS34 2.9 0.0 1.0
CG A:HIS34 3.0 0.0 1.0
HE1 A:HIS34 3.1 0.0 1.0
HB3 A:CYS31 3.2 0.0 1.0
HB3 A:CYS8 3.2 0.0 1.0
H A:CYS31 3.2 0.0 1.0
HB2 A:TYR10 3.3 0.0 1.0
CB A:CYS8 3.3 0.0 1.0
CB A:CYS11 3.4 0.0 1.0
CB A:CYS31 3.4 0.0 1.0
CB A:HIS34 3.4 0.0 1.0
HB2 A:CYS11 3.4 0.0 1.0
H A:CYS11 3.5 0.0 1.0
N A:CYS11 3.6 0.0 1.0
HB2 A:CYS8 3.6 0.0 1.0
HG2 A:ARG17 3.7 0.0 1.0
CA A:CYS11 3.9 0.0 1.0
HB3 A:TYR10 3.9 0.0 1.0
HA A:CYS11 3.9 0.0 1.0
NE2 A:HIS34 4.0 0.0 1.0
N A:CYS31 4.0 0.0 1.0
CD2 A:HIS34 4.0 0.0 1.0
HB3 A:ARG17 4.0 0.0 1.0
CB A:TYR10 4.0 0.0 1.0
C A:TYR10 4.0 0.0 1.0
HB3 A:HIS34 4.1 0.0 1.0
HB2 A:CYS31 4.2 0.0 1.0
CA A:CYS31 4.3 0.0 1.0
H A:HIS34 4.3 0.0 1.0
HB3 A:CYS11 4.3 0.0 1.0
H A:TYR10 4.3 0.0 1.0
HB3 A:GLU33 4.4 0.0 1.0
N A:HIS34 4.5 0.0 1.0
CA A:TYR10 4.5 0.0 1.0
CA A:HIS34 4.5 0.0 1.0
O A:CYS31 4.6 0.0 1.0
CG A:ARG17 4.6 0.0 1.0
O A:TYR10 4.7 0.0 1.0
CA A:CYS8 4.7 0.0 1.0
N A:TYR10 4.8 0.0 1.0
CB A:ARG17 4.8 0.0 1.0
HA A:ILE30 4.8 0.0 1.0
C A:CYS31 4.8 0.0 1.0
HE2 A:HIS34 4.9 0.0 1.0
HA A:HIS34 4.9 0.0 1.0
HD2 A:HIS34 5.0 0.0 1.0
O A:CYS8 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 5lme

Go back to Zinc Binding Sites List in 5lme
Zinc binding site 2 out of 2 in the Specific-Dna Binding Activity of the Cross-Brace Zinc Finger Motif of the Piggybac Transposase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Specific-Dna Binding Activity of the Cross-Brace Zinc Finger Motif of the Piggybac Transposase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:0.0
occ:1.00
SG A:CYS23 2.3 0.0 1.0
SG A:CYS42 2.3 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
SG A:CYS26 2.3 0.0 1.0
HB2 A:CYS42 3.1 0.0 1.0
HB3 A:CYS23 3.1 0.0 1.0
HB3 A:CYS26 3.2 0.0 1.0
HB3 A:CYS39 3.2 0.0 1.0
CB A:CYS23 3.3 0.0 1.0
CB A:CYS42 3.3 0.0 1.0
CB A:CYS39 3.4 0.0 1.0
H A:CYS39 3.4 0.0 1.0
CB A:CYS26 3.4 0.0 1.0
H A:CYS26 3.4 0.0 1.0
HB2 A:CYS23 3.7 0.0 1.0
HB3 A:LYS25 3.8 0.0 1.0
N A:CYS26 4.0 0.0 1.0
HB2 A:LYS28 4.0 0.0 1.0
HB3 A:CYS42 4.1 0.0 1.0
N A:CYS39 4.1 0.0 1.0
HB2 A:SER41 4.1 0.0 1.0
HB2 A:CYS26 4.2 0.0 1.0
N A:CYS42 4.2 0.0 1.0
CA A:CYS39 4.2 0.0 1.0
H A:CYS42 4.2 0.0 1.0
HB2 A:CYS39 4.2 0.0 1.0
O A:CYS39 4.3 0.0 1.0
CA A:CYS26 4.3 0.0 1.0
CA A:CYS42 4.4 0.0 1.0
H A:LYS28 4.5 0.0 1.0
C A:CYS39 4.5 0.0 1.0
H A:SER41 4.5 0.0 1.0
C A:SER41 4.6 0.0 1.0
CA A:CYS23 4.6 0.0 1.0
H A:LYS25 4.7 0.0 1.0
H A:LYS27 4.8 0.0 1.0
HA A:CYS42 4.8 0.0 1.0
HD3 A:LYS28 4.8 0.0 1.0
HG3 A:MET38 4.8 0.0 1.0
O A:CYS23 4.8 0.0 1.0
C A:CYS23 4.8 0.0 1.0
CB A:LYS25 4.9 0.0 1.0
C A:LYS25 4.9 0.0 1.0

Reference:

N.Morellet, X.Li, S.A.Wieninger, J.L.Taylor, J.Bischerour, S.Moriau, E.Lescop, B.Bardiaux, N.Mathy, N.Assrir, M.Betermier, M.Nilges, A.B.Hickman, F.Dyda, N.L.Craig, E.Guittet. Sequence-Specific Dna Binding Activity of the Cross-Brace Zinc Finger Motif of the Piggybac Transposase. Nucleic Acids Res. V. 46 2660 2018.
ISSN: ESSN 1362-4962
PubMed: 29385532
DOI: 10.1093/NAR/GKY044
Page generated: Wed Dec 16 06:29:47 2020

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