Zinc in PDB 5kdv: Impa Metallopeptidase From Pseudomonas Aeruginosa

The structure of Impa Metallopeptidase From Pseudomonas Aeruginosa, PDB code: 5kdv was solved by I.Noach, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.72 / 1.93
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	155.280, 96.410, 100.920, 90.00, 124.66, 90.00
R / Rfree (%)	17.2 / 20.4

The binding sites of Zinc atom in the Impa Metallopeptidase From Pseudomonas Aeruginosa (pdb code 5kdv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Impa Metallopeptidase From Pseudomonas Aeruginosa, PDB code: 5kdv:

Zinc binding site 1 out of 1 in the Impa Metallopeptidase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Impa Metallopeptidase From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1003 b:20.8 occ:1.00 OE1 A:GLU716 2.0 15.6 1.0 NE2 A:HIS696 2.1 13.0 1.0 NE2 A:HIS700 2.1 14.1 1.0 CD A:GLU716 2.8 17.4 1.0 OE2 A:GLU716 2.9 19.2 1.0 CE1 A:HIS700 3.1 13.3 1.0 CD2 A:HIS696 3.1 13.7 1.0 CE1 A:HIS696 3.1 13.1 1.0 CD2 A:HIS700 3.2 14.3 1.0 OE1 A:GLU697 4.0 20.1 1.0 OH A:TYR776 4.1 31.3 1.0 ND1 A:HIS696 4.2 13.5 1.0 ND1 A:HIS700 4.2 13.2 1.0 ND2 A:ASN719 4.2 11.3 1.0 CG A:HIS696 4.2 13.0 1.0 CG A:HIS700 4.3 13.4 1.0 CG A:GLU716 4.3 16.2 1.0 CE1 A:TYR776 4.4 25.5 1.0 CZ A:TYR776 4.6 25.6 1.0 CD A:GLU697 4.8 19.2 1.0 CB A:GLU716 4.8 15.4 1.0 OE2 A:GLU697 4.9 19.6 1.0

I.Noach, E.Ficko-Blean, B.Pluvinage, C.Stuart, M.L.Jenkins, D.Brochu, N.Buenbrazo, W.Wakarchuk, J.E.Burke, M.Gilbert, A.B.Boraston. Recognition of Protein-Linked Glycans As A Determinant of Peptidase Activity. Proc. Natl. Acad. Sci. V. 114 E679 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28096352
DOI: 10.1073/PNAS.1615141114