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Zinc in PDB 5kdr: The Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antimicrobial Agent Moiramide B.

Enzymatic activity of The Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antimicrobial Agent Moiramide B.

All present enzymatic activity of The Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antimicrobial Agent Moiramide B.:
6.4.1.2;

Protein crystallography data

The structure of The Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antimicrobial Agent Moiramide B., PDB code: 5kdr was solved by M.A.Silvers, S.Pakhomova, D.Neau, W.C.Silvers, N.Anzalone, C.M.Taylor, G.L.Waldrop, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 153.807, 49.445, 100.048, 90.00, 91.94, 90.00
R / Rfree (%) 22.9 / 27.6

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antimicrobial Agent Moiramide B. (pdb code 5kdr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antimicrobial Agent Moiramide B., PDB code: 5kdr:

Zinc binding site 1 out of 1 in 5kdr

Go back to Zinc Binding Sites List in 5kdr
Zinc binding site 1 out of 1 in the The Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antimicrobial Agent Moiramide B.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antimicrobial Agent Moiramide B. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn304

b:58.9
occ:1.00
 SG B:CYS52 2.3 86.0 1.0
SG B:CYS33 2.3 0.7 1.0
SG B:CYS36 2.3 97.1 1.0
SG B:CYS55 2.3 90.8 1.0
CB B:CYS33 3.3 98.9 1.0
CB B:CYS52 3.3 80.8 1.0
CB B:CYS55 3.4 91.2 1.0
CB B:CYS36 3.4 0.3 1.0
N B:CYS36 3.8 99.1 1.0
N B:CYS55 4.1 85.8 1.0
CA B:CYS36 4.2 0.8 1.0
CA B:CYS55 4.3 87.8 1.0
CB B:HIS57 4.4 68.5 1.0
CB B:LYS35 4.5 98.8 1.0
CA B:CYS33 4.8 97.8 1.0
CA B:CYS52 4.8 76.2 1.0
C B:CYS36 4.8 0.1 1.0
C B:CYS55 4.8 83.9 1.0
C B:LYS35 4.9 0.4 1.0
N B:HIS57 4.9 70.3 1.0
CB B:ASN54 5.0 85.6 1.0

Reference:

M.A.Silvers, S.Pakhomova, D.B.Neau, W.C.Silvers, N.Anzalone, C.M.Taylor, G.L.Waldrop. Crystal Structure of Carboxyltransferase From Staphylococcus Aureus Bound to the Antibacterial Agent Moiramide B. Biochemistry V. 55 4666 2016.
ISSN: ISSN 0006-2960
PubMed: 27471863
DOI: 10.1021/ACS.BIOCHEM.6B00641
Page generated: Wed Dec 16 06:27:04 2020

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