Zinc in PDB 5kd2: BT_4244 Metallopeptidase From Bacteroides Thetaiotaomicron

The structure of BT_4244 Metallopeptidase From Bacteroides Thetaiotaomicron, PDB code: 5kd2 was solved by I.Noach, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.98 / 2.15
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.957, 81.957, 182.138, 90.00, 90.00, 120.00
R / Rfree (%)	16.9 / 21

The binding sites of Zinc atom in the BT_4244 Metallopeptidase From Bacteroides Thetaiotaomicron (pdb code 5kd2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the BT_4244 Metallopeptidase From Bacteroides Thetaiotaomicron, PDB code: 5kd2:

Zinc binding site 1 out of 1 in the BT_4244 Metallopeptidase From Bacteroides Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of BT_4244 Metallopeptidase From Bacteroides Thetaiotaomicron within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:23.5 occ:1.00 OE1 A:GLU591 2.1 20.9 1.0 NE2 A:HIS578 2.1 21.9 1.0 NE2 A:HIS574 2.1 21.7 1.0 O2 A:EDO902 2.2 41.0 1.0 CD A:GLU591 2.9 23.0 1.0 CD2 A:HIS574 2.9 21.1 1.0 CE1 A:HIS578 3.0 22.7 1.0 OE2 A:GLU591 3.0 23.5 1.0 CD2 A:HIS578 3.1 22.7 1.0 O1 A:EDO902 3.2 46.6 1.0 CE1 A:HIS574 3.2 21.1 1.0 C2 A:EDO902 3.6 41.3 1.0 C1 A:EDO902 4.1 44.8 1.0 ND1 A:HIS578 4.1 24.2 1.0 CG A:HIS574 4.1 20.8 1.0 CG A:HIS578 4.2 21.8 1.0 O A:HOH1308 4.2 42.5 1.0 ND2 A:ASN594 4.2 20.7 1.0 ND1 A:HIS574 4.3 21.6 1.0 CG A:GLU591 4.3 22.7 1.0 OE1 A:GLN575 4.5 31.3 1.0 NE2 A:GLN575 4.7 31.6 1.0 CB A:GLU591 4.8 20.6 1.0 CA A:GLU591 4.9 21.2 1.0 CD A:GLN575 4.9 27.2 1.0

I.Noach, E.Ficko-Blean, B.Pluvinage, C.Stuart, M.L.Jenkins, D.Brochu, N.Buenbrazo, W.Wakarchuk, J.E.Burke, M.Gilbert, A.B.Boraston. Recognition of Protein-Linked Glycans As A Determinant of Peptidase Activity. Proc. Natl. Acad. Sci. V. 114 E679 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28096352
DOI: 10.1073/PNAS.1615141114