Zinc in PDB 5i2b: Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin

All present enzymatic activity of Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin:
3.5.1.88;

The structure of Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin, PDB code: 5i2b was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.01 / 1.70
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	38.590, 70.250, 140.730, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 20.5

The binding sites of Zinc atom in the Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin (pdb code 5i2b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin, PDB code: 5i2b:

Zinc binding site 1 out of 1 in the Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:20.1 occ:0.56 NE2 A:HIS141 2.2 22.2 1.0 O4 A:BB2202 2.2 37.0 1.0 NE2 A:HIS145 2.3 21.7 1.0 SG A:CYS99 2.3 23.9 1.0 HO2 A:BB2202 2.3 36.2 1.0 O2 A:BB2202 2.3 30.2 1.0 C3 A:BB2202 2.8 36.3 1.0 N1 A:BB2202 2.9 33.3 1.0 CD2 A:HIS141 3.1 19.0 1.0 CE1 A:HIS145 3.2 22.9 1.0 CE1 A:HIS141 3.2 20.4 1.0 CD2 A:HIS145 3.3 21.8 1.0 CB A:CYS99 3.4 21.5 1.0 NE2 A:GLN51 3.5 22.2 1.0 O A:HOH385 3.6 19.2 1.0 CA A:CYS99 3.8 22.8 1.0 HN1 A:BB2202 3.9 40.0 1.0 H6 A:BB2202 4.1 42.6 1.0 CD A:GLN51 4.1 22.7 1.0 OE1 A:GLN51 4.2 23.9 1.0 C5 A:BB2202 4.2 36.3 1.0 H72 A:BB2202 4.2 40.7 1.0 CG A:HIS141 4.2 18.8 1.0 N A:LEU100 4.3 25.2 1.0 ND1 A:HIS141 4.3 19.3 1.0 ND1 A:HIS145 4.4 21.9 1.0 CG A:HIS145 4.4 20.7 1.0 C A:CYS99 4.5 24.1 1.0 O A:HOH386 4.6 16.4 1.0 C6 A:BB2202 4.6 35.5 1.0 H51 A:BB2202 4.6 43.5 1.0 OE1 A:GLU142 4.7 26.1 1.0 OE2 A:GLU142 4.7 26.8 1.0 H91 A:BB2202 4.8 35.3 1.0 O A:GLY98 4.8 25.3 1.0 H52 A:BB2202 5.0 43.5 1.0 C7 A:BB2202 5.0 33.9 1.0

D.G.Conrady, D.M.Dranow, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin To Be Published.