Zinc in PDB 5i1r: Quantitative Characterization of Configurational Space Sampled By Hiv- 1 Nucleocapsid Using Solution uc(Nmr) and X-Ray Scattering

The binding sites of Zinc atom in the Quantitative Characterization of Configurational Space Sampled By Hiv- 1 Nucleocapsid Using Solution uc(Nmr) and X-Ray Scattering (pdb code 5i1r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Quantitative Characterization of Configurational Space Sampled By Hiv- 1 Nucleocapsid Using Solution uc(Nmr) and X-Ray Scattering, PDB code: 5i1r:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Quantitative Characterization of Configurational Space Sampled By Hiv- 1 Nucleocapsid Using Solution uc(Nmr) and X-Ray Scattering


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Quantitative Characterization of Configurational Space Sampled By Hiv- 1 Nucleocapsid Using Solution uc(Nmr) and X-Ray Scattering within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:0.0 occ:1.00 NE2 A:HIS400 2.3 0.0 1.0 SG A:CYS392 2.4 0.0 1.0 SG A:CYS395 2.4 0.0 1.0 SG A:CYS405 2.4 0.0 1.0 H A:CYS395 2.9 0.0 1.0 HB2 A:CYS405 2.9 0.0 1.0 HB3 A:CYS392 3.1 0.0 1.0 CB A:CYS392 3.2 0.0 1.0 HB2 A:CYS392 3.2 0.0 1.0 HB3 A:CYS395 3.2 0.0 1.0 CE1 A:HIS400 3.2 0.0 1.0 CB A:CYS405 3.3 0.0 1.0 CD2 A:HIS400 3.3 0.0 1.0 CB A:CYS395 3.4 0.0 1.0 HE1 A:HIS400 3.4 0.0 1.0 HD2 A:HIS400 3.5 0.0 1.0 HB3 A:ASN394 3.6 0.0 1.0 HB1 A:ALA407 3.7 0.0 1.0 N A:CYS395 3.7 0.0 1.0 HB3 A:CYS405 4.0 0.0 1.0 CA A:CYS395 4.1 0.0 1.0 HA A:ALA402 4.1 0.0 1.0 HA A:CYS405 4.2 0.0 1.0 H A:GLY396 4.2 0.0 1.0 HB2 A:CYS395 4.3 0.0 1.0 H A:LYS397 4.3 0.0 1.0 CA A:CYS405 4.4 0.0 1.0 ND1 A:HIS400 4.4 0.0 1.0 H A:ASN394 4.4 0.0 1.0 CG A:HIS400 4.5 0.0 1.0 H A:ALA407 4.5 0.0 1.0 HB3 A:LYS397 4.6 0.0 1.0 CA A:CYS392 4.7 0.0 1.0 CB A:ASN394 4.7 0.0 1.0 H A:ARG406 4.7 0.0 1.0 CB A:ALA407 4.7 0.0 1.0 N A:GLY396 4.8 0.0 1.0 C A:CYS395 4.8 0.0 1.0 C A:ASN394 4.8 0.0 1.0 HB2 A:ALA407 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Quantitative Characterization of Configurational Space Sampled By Hiv- 1 Nucleocapsid Using Solution uc(Nmr) and X-Ray Scattering


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Quantitative Characterization of Configurational Space Sampled By Hiv- 1 Nucleocapsid Using Solution uc(Nmr) and X-Ray Scattering within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn902 b:0.0 occ:1.00 NE2 A:HIS421 2.3 0.0 1.0 SG A:CYS416 2.4 0.0 1.0 SG A:CYS413 2.4 0.0 1.0 SG A:CYS426 2.4 0.0 1.0 HB2 A:CYS426 2.9 0.0 1.0 H A:CYS416 3.1 0.0 1.0 HB3 A:CYS416 3.1 0.0 1.0 HB2 A:CYS413 3.1 0.0 1.0 CB A:CYS413 3.1 0.0 1.0 HB3 A:CYS413 3.1 0.0 1.0 CB A:CYS426 3.2 0.0 1.0 CE1 A:HIS421 3.2 0.0 1.0 CB A:CYS416 3.3 0.0 1.0 HE1 A:HIS421 3.4 0.0 1.0 CD2 A:HIS421 3.4 0.0 1.0 HD2 A:HIS421 3.6 0.0 1.0 N A:CYS416 3.7 0.0 1.0 HB3 A:CYS426 3.7 0.0 1.0 HB3 A:LYS415 3.9 0.0 1.0 HA A:MET423 4.0 0.0 1.0 CA A:CYS416 4.0 0.0 1.0 HZ1 A:LYS415 4.1 0.0 1.0 HB2 A:CYS416 4.2 0.0 1.0 H A:LYS418 4.2 0.0 1.0 H A:GLY417 4.2 0.0 1.0 HB2 A:LYS418 4.3 0.0 1.0 ND1 A:HIS421 4.4 0.0 1.0 HA A:CYS426 4.4 0.0 1.0 HE3 A:LYS415 4.5 0.0 1.0 CA A:CYS426 4.5 0.0 1.0 H A:LYS415 4.5 0.0 1.0 CG A:HIS421 4.5 0.0 1.0 CA A:CYS413 4.6 0.0 1.0 C A:LYS415 4.7 0.0 1.0 C A:CYS416 4.8 0.0 1.0 N A:GLY417 4.8 0.0 1.0 CB A:LYS415 4.8 0.0 1.0 NZ A:LYS415 4.9 0.0 1.0 HA A:CYS416 4.9 0.0 1.0 HA A:CYS413 5.0 0.0 1.0

L.Deshmukh, C.D.Schwieters, A.Grishaev, G.M.Clore. Quantitative Characterization of Configurational Space Sampled By Hiv-1 Nucleocapsid Using Solution uc(Nmr), X-Ray Scattering and Protein Engineering. Chemphyschem V. 17 1548 2016.
ISSN: ISSN 1439-7641
PubMed: 26946052
DOI: 10.1002/CPHC.201600212