Zinc in PDB 5gl7: Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase

All present enzymatic activity of Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase:
6.1.1.10;

The structure of Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase, PDB code: 5gl7 was solved by H.Y.Cho, H.J.Lee, B.S.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.28 / 2.01
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	65.035, 93.030, 122.084, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 22.6

The binding sites of Zinc atom in the Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase (pdb code 5gl7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase, PDB code: 5gl7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:47.2 occ:1.00 SG A:CYS389 2.2 48.7 1.0 SG A:CYS435 2.4 46.9 1.0 SG A:CYS392 2.5 54.1 1.0 SG A:CYS438 2.5 45.6 1.0 CB A:CYS435 3.2 39.1 1.0 CB A:CYS389 3.2 45.0 1.0 CB A:CYS392 3.4 46.1 1.0 CB A:CYS438 3.5 43.1 1.0 N A:CYS438 3.7 49.5 1.0 OG A:SER440 4.1 47.0 1.0 N A:CYS392 4.1 52.2 1.0 CA A:CYS438 4.2 45.5 1.0 CA A:CYS392 4.3 49.8 1.0 CB A:VAL437 4.4 45.5 1.0 CA A:CYS389 4.6 48.4 1.0 CA A:CYS435 4.7 39.4 1.0 C A:VAL437 4.8 48.7 1.0 C A:CYS438 4.8 47.7 1.0 CB A:HIS391 4.9 50.6 1.0 N A:ARG439 4.9 48.3 1.0 CG1 A:VAL437 4.9 44.4 1.0 CA A:VAL437 4.9 45.3 1.0 N A:VAL437 5.0 43.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn902 b:34.5 occ:1.00 SG A:CYS405 2.3 34.4 1.0 SG A:CYS408 2.3 34.0 1.0 SG A:CYS421 2.4 31.5 1.0 SG A:CYS418 2.4 37.1 1.0 CB A:CYS405 3.2 33.1 1.0 CB A:CYS421 3.2 31.1 1.0 CB A:CYS418 3.2 32.7 1.0 CB A:CYS408 3.3 32.7 1.0 N A:CYS421 3.7 33.7 1.0 N A:CYS408 3.8 30.8 1.0 CA A:CYS421 4.1 38.2 1.0 CA A:CYS408 4.1 32.6 1.0 CB A:TYR410 4.4 39.5 1.0 CB A:PHE407 4.5 34.9 1.0 CA A:CYS405 4.6 38.6 1.0 CB A:LYS420 4.6 39.3 1.0 C A:PHE407 4.7 33.3 1.0 CA A:CYS418 4.7 37.7 1.0 C A:CYS408 4.7 35.5 1.0 C A:LYS420 4.8 33.1 1.0 N A:TYR410 4.8 35.9 1.0 N A:GLY409 4.8 34.6 1.0 C A:CYS421 4.9 36.0 1.0 O A:CYS418 4.9 37.8 1.0 CA A:PHE407 5.0 32.2 1.0

H.Y.Cho, H.J.Lee, B.S.Kang. Crystal Structure of A Truncated Human Cytosolic Methionyl-Trna Synthetase To Be Published.