Zinc in PDB 5ft9: Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2)

All present enzymatic activity of Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2):
3.1.26.5;

The structure of Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2), PDB code: 5ft9 was solved by P.Fernandez-Millan, F.Pinker, C.Schelcher, A.Gobert, P.Giege, C.Sauter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.71 / 3.05
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	70.500, 72.800, 80.300, 63.10, 72.20, 78.40
R / Rfree (%)	24.2 / 29

The binding sites of Zinc atom in the Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2) (pdb code 5ft9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2), PDB code: 5ft9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:0.2 occ:1.00 NE2 A:HIS494 2.3 98.3 1.0 SG A:CYS284 2.4 0.3 1.0 SG A:CYS281 2.4 0.9 1.0 SG A:CYS511 2.5 0.1 1.0 CB A:CYS281 3.0 0.2 1.0 CD2 A:HIS494 3.0 91.4 1.0 OG A:SER283 3.2 0.8 1.0 CB A:CYS511 3.3 0.1 1.0 CE1 A:HIS494 3.4 93.6 1.0 CB A:CYS284 3.5 1.0 1.0 N A:CYS284 3.9 1.0 1.0 CA A:CYS511 4.3 98.3 1.0 CG A:HIS494 4.3 82.5 1.0 CA A:CYS284 4.3 0.6 1.0 ND1 A:HIS494 4.4 81.8 1.0 CA A:CYS281 4.4 0.1 1.0 CB A:SER283 4.6 0.9 1.0 O A:CYS281 4.8 0.4 1.0 C A:CYS281 4.8 0.8 1.0 C A:SER283 4.9 0.7 1.0

Zinc binding site 2 out of 2 in the Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Arabidopsis Thaliana Nuclear Protein-Only Rnase P 2 (PRORP2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1001 b:0.1 occ:1.00 SG B:CYS284 2.2 0.7 1.0 NE2 B:HIS494 2.3 0.2 1.0 SG B:CYS511 2.3 0.3 1.0 SG B:CYS281 2.8 96.0 1.0 CB B:CYS281 3.1 0.1 1.0 CD2 B:HIS494 3.1 0.5 1.0 CB B:CYS284 3.2 0.4 1.0 CB B:CYS511 3.3 0.5 1.0 CE1 B:HIS494 3.4 0.1 1.0 N B:CYS284 3.6 0.4 1.0 CA B:CYS284 4.0 0.4 1.0 CG B:HIS494 4.3 83.5 1.0 CB B:SER283 4.4 0.3 1.0 ND1 B:HIS494 4.4 84.2 1.0 CA B:CYS511 4.4 0.0 1.0 CA B:CYS281 4.4 0.2 1.0 O B:CYS281 4.5 0.5 1.0 C B:SER283 4.6 0.3 1.0 C B:CYS281 4.7 0.9 1.0 C B:CYS284 4.7 0.0 1.0 CA B:SER283 4.9 0.4 1.0 O B:GLU286 4.9 0.9 1.0 OG B:SER513 4.9 0.3 1.0 N B:SER283 5.0 0.9 1.0 N B:SER285 5.0 0.7 1.0

F.Pinker, C.Schelcher, P.Fernandez-Millan, A.Gobert, C.Birck, P.Roblin, P.Giege, C.Sauter. Structures of Arabidopsis Nuclear Rnase P Alone and with Trna Reveal Plasticities To Be Published.