Zinc in PDB 5fry: Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,5-Dimethylphenol

The structure of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,5-Dimethylphenol, PDB code: 5fry was solved by V.V.Patil, E.J.Woo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.191 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.730, 70.696, 105.141, 90.00, 90.00, 90.00
R / Rfree (%)	26.45 / 31.99

The binding sites of Zinc atom in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,5-Dimethylphenol (pdb code 5fry). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,5-Dimethylphenol, PDB code: 5fry:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,5-Dimethylphenol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,5-Dimethylphenol within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1208 b:38.0 occ:1.00 OE2 A:GLU174 2.0 35.0 1.0 SG A:CYS177 2.2 40.8 1.0 SG A:CYS151 2.2 29.0 1.0 SG A:CYS185 2.3 40.1 1.0 CD A:GLU174 3.0 31.4 1.0 CB A:CYS177 3.1 36.1 1.0 CB A:CYS151 3.1 25.6 1.0 OE1 A:GLU174 3.2 31.6 1.0 CB A:CYS185 3.4 35.9 1.0 CA A:CYS177 3.7 43.1 1.0 N A:CYS151 3.9 36.7 1.0 N A:VAL178 4.1 44.9 1.0 CA A:CYS151 4.2 34.2 1.0 OG A:SER133 4.2 44.4 1.0 C A:CYS177 4.4 45.1 1.0 CG A:GLU174 4.4 34.3 1.0 CG2 A:VAL178 4.5 43.9 1.0 CA A:CYS185 4.5 41.2 1.0 CE3 A:TRP130 4.5 25.4 1.0 O A:GLU176 4.6 42.9 1.0 CZ3 A:TRP130 4.8 31.0 1.0 CB A:SER133 4.8 44.6 1.0 N A:VAL150 4.9 31.3 1.0 N A:GLY179 4.9 41.5 1.0 CG2 A:VAL150 4.9 38.9 1.0 N A:CYS177 4.9 41.9 1.0 NE2 A:GLN154 4.9 36.2 1.0 CA A:GLY136 5.0 30.9 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,5-Dimethylphenol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,5-Dimethylphenol within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1208 b:36.6 occ:1.00 OE2 B:GLU174 2.1 32.5 1.0 SG B:CYS185 2.2 36.5 1.0 SG B:CYS151 2.3 34.6 1.0 SG B:CYS177 2.4 41.2 1.0 CD B:GLU174 3.0 33.9 1.0 CB B:CYS177 3.2 41.8 1.0 CB B:CYS185 3.3 36.2 1.0 OE1 B:GLU174 3.3 34.9 1.0 CB B:CYS151 3.3 31.9 1.0 CA B:CYS177 3.6 42.0 1.0 N B:CYS151 3.9 38.3 1.0 N B:VAL178 4.1 43.8 1.0 CA B:CYS151 4.3 33.8 1.0 C B:CYS177 4.3 42.4 1.0 CG B:GLU174 4.4 36.3 1.0 CA B:CYS185 4.4 39.8 1.0 OG B:SER133 4.5 35.9 1.0 CG2 B:VAL178 4.5 39.5 1.0 O B:GLU176 4.5 36.3 1.0 CE3 B:TRP130 4.5 29.8 1.0 N B:VAL150 4.6 40.1 1.0 CB B:SER133 4.7 31.6 1.0 N B:CYS177 4.8 44.5 1.0 N B:GLY179 4.8 43.8 1.0 CZ3 B:TRP130 4.8 33.8 1.0 CA B:GLY136 4.9 37.5 1.0 C B:VAL150 4.9 37.1 1.0

V.V.Patil, K.-H.Park, S.-G.Lee, E.J.Woo. Structural Analysis of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr Structure V. 624 24 2016.
ISSN: ISSN 0969-2126
PubMed: 27050690
DOI: 10.1016/J.STR.2016.03.006