Zinc in PDB 5frw: Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with Phenol

The structure of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with Phenol, PDB code: 5frw was solved by V.V.Patil, E.J.Woo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.064 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.946, 70.475, 104.852, 90.00, 90.00, 90.00
R / Rfree (%)	19.45 / 24.62

The binding sites of Zinc atom in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with Phenol (pdb code 5frw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with Phenol, PDB code: 5frw:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with Phenol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with Phenol within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1210 b:35.5 occ:1.00 OE2 A:GLU174 2.0 36.1 1.0 SG A:CYS185 2.2 41.6 1.0 SG A:CYS151 2.3 32.0 1.0 SG A:CYS177 2.4 39.5 1.0 CD A:GLU174 3.0 35.3 1.0 CB A:CYS177 3.2 42.6 1.0 CB A:CYS151 3.2 29.8 1.0 OE1 A:GLU174 3.3 38.5 1.0 CB A:CYS185 3.4 37.8 1.0 CA A:CYS177 3.6 48.2 1.0 N A:CYS151 4.0 31.9 1.0 N A:VAL178 4.0 49.8 1.0 CA A:CYS151 4.2 31.5 1.0 C A:CYS177 4.3 50.9 1.0 CG A:GLU174 4.4 38.0 1.0 OG A:SER133 4.4 38.0 1.0 CG2 A:VAL178 4.6 44.0 1.0 CE3 A:TRP130 4.6 31.1 1.0 O A:GLU176 4.6 40.2 1.0 CA A:CYS185 4.6 39.1 1.0 N A:VAL150 4.7 35.1 1.0 CB A:SER133 4.7 35.1 1.0 N A:GLY179 4.8 46.6 1.0 CZ3 A:TRP130 4.9 28.2 1.0 N A:CYS177 4.9 43.5 1.0 CA A:GLY136 5.0 42.9 1.0 C A:VAL150 5.0 32.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with Phenol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with Phenol within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1210 b:33.9 occ:1.00 OE2 B:GLU174 1.9 37.4 1.0 SG B:CYS151 2.3 33.4 1.0 SG B:CYS177 2.4 39.7 1.0 SG B:CYS185 2.4 38.4 1.0 CD B:GLU174 2.9 41.3 1.0 CB B:CYS151 3.2 35.7 1.0 CB B:CYS177 3.3 41.7 1.0 OE1 B:GLU174 3.3 40.6 1.0 CB B:CYS185 3.4 37.6 1.0 CA B:CYS177 3.6 42.1 1.0 N B:CYS151 4.0 38.2 1.0 N B:VAL178 4.1 44.5 1.0 CA B:CYS151 4.2 35.6 1.0 CG B:GLU174 4.3 41.9 1.0 C B:CYS177 4.3 43.8 1.0 OG B:SER133 4.3 40.4 1.0 O B:GLU176 4.4 38.8 1.0 CG2 B:VAL178 4.4 43.3 1.0 CA B:CYS185 4.6 37.8 1.0 CB B:SER133 4.7 30.7 1.0 CE3 B:TRP130 4.7 30.8 1.0 N B:VAL150 4.8 38.4 1.0 N B:GLY179 4.8 49.8 1.0 CA B:GLY136 4.8 46.3 1.0 N B:CYS177 4.9 38.7 1.0 C B:VAL150 5.0 40.6 1.0 CZ3 B:TRP130 5.0 30.6 1.0

V.V.Patil, K.-H.Park, S.-G.Lee, E.J.Woo. Structural Analysis of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr Structure V. 624 24 2016.
ISSN: ISSN 0969-2126
PubMed: 27050690
DOI: 10.1016/J.STR.2016.03.006