Zinc in PDB 5fru: Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr

The structure of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr, PDB code: 5fru was solved by V.V.Patil, E.J.Woo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.21 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.634, 66.516, 106.039, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 25.3

The binding sites of Zinc atom in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr (pdb code 5fru). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr, PDB code: 5fru:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1209 b:27.3 occ:1.00 OE2 A:GLU174 2.0 27.8 1.0 SG A:CYS151 2.3 26.3 1.0 SG A:CYS185 2.4 26.5 1.0 SG A:CYS177 2.4 28.9 1.0 CD A:GLU174 2.9 27.9 1.0 CB A:CYS151 3.2 24.0 1.0 CB A:CYS177 3.3 28.4 1.0 OE1 A:GLU174 3.3 26.9 1.0 CB A:CYS185 3.5 27.6 1.0 CA A:CYS177 3.7 29.3 1.0 N A:CYS151 4.0 26.8 1.0 N A:VAL178 4.1 29.4 1.0 CA A:CYS151 4.2 28.2 1.0 CG A:GLU174 4.3 31.5 1.0 C A:CYS177 4.3 32.8 1.0 CG2 A:VAL178 4.4 36.5 1.0 OG A:SER133 4.4 30.3 1.0 CE3 A:TRP130 4.5 24.6 1.0 O A:GLU176 4.6 30.8 1.0 CA A:CYS185 4.6 26.8 1.0 N A:GLY179 4.6 30.6 1.0 N A:VAL150 4.7 27.2 1.0 CB A:SER133 4.7 24.3 1.0 CZ3 A:TRP130 4.8 25.4 1.0 CA A:GLY136 4.9 30.3 1.0 N A:CYS177 5.0 30.4 1.0 C A:VAL150 5.0 30.6 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1209 b:27.9 occ:1.00 OE2 B:GLU174 2.0 27.3 1.0 SG B:CYS151 2.3 25.7 1.0 SG B:CYS177 2.3 31.0 1.0 SG B:CYS185 2.4 28.0 1.0 CD B:GLU174 3.0 26.4 1.0 CB B:CYS151 3.2 21.9 1.0 CB B:CYS177 3.3 31.4 1.0 OE1 B:GLU174 3.3 26.3 1.0 CB B:CYS185 3.4 28.3 1.0 CA B:CYS177 3.6 31.3 1.0 N B:CYS151 4.0 24.2 1.0 N B:VAL178 4.0 30.9 1.0 CA B:CYS151 4.2 25.2 1.0 C B:CYS177 4.3 34.4 1.0 CG B:GLU174 4.3 26.1 1.0 OG B:SER133 4.4 29.3 1.0 O B:GLU176 4.5 29.5 1.0 CG2 B:VAL178 4.5 39.8 1.0 CE3 B:TRP130 4.6 22.4 1.0 CA B:CYS185 4.6 28.2 1.0 N B:VAL150 4.6 25.1 1.0 CB B:SER133 4.7 27.8 1.0 CZ3 B:TRP130 4.8 23.9 1.0 N B:GLY179 4.8 34.3 1.0 CA B:GLY136 4.9 30.1 1.0 N B:CYS177 4.9 29.9 1.0 C B:VAL150 5.0 26.5 1.0 CG2 B:VAL150 5.0 27.3 1.0

V.V.Patil, K.-H.Park, S.-G.Lee, E.J.Woo. Structural Analysis of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr Structure V. 624 24 2016.
ISSN: ISSN 0969-2126
PubMed: 27050690
DOI: 10.1016/J.STR.2016.03.006