Zinc in PDB 5e8c: Pseudorabies Virus Nuclear Egress Complex, PUL31, PUL34

The structure of Pseudorabies Virus Nuclear Egress Complex, PUL31, PUL34, PDB code: 5e8c was solved by T.Zeev-Ben-Mordehai, J.Cheleski, C.Whittle, K.El Omari, K.Harlos, C.Hagen, B.Klupp, T.C.Mettenleiter, K.Gruenewald, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.97 / 2.90
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	91.690, 91.690, 108.260, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 26.5

The structure of Pseudorabies Virus Nuclear Egress Complex, PUL31, PUL34 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Pseudorabies Virus Nuclear Egress Complex, PUL31, PUL34 (pdb code 5e8c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Pseudorabies Virus Nuclear Egress Complex, PUL31, PUL34, PDB code: 5e8c:

Zinc binding site 1 out of 1 in the Pseudorabies Virus Nuclear Egress Complex, PUL31, PUL34


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pseudorabies Virus Nuclear Egress Complex, PUL31, PUL34 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:63.7 occ:1.00 NE2 A:HIS188 2.0 64.1 1.0 SG A:CYS89 2.2 54.9 1.0 SG A:CYS92 2.6 60.6 1.0 SG A:CYS73 2.6 59.8 1.0 CE1 A:HIS188 2.7 63.9 1.0 CB A:CYS73 3.1 55.7 1.0 CB A:CYS89 3.1 51.2 1.0 CD2 A:HIS188 3.3 64.3 1.0 CB A:CYS92 3.4 57.5 1.0 N A:CYS92 3.6 57.5 1.0 ND1 A:HIS188 3.9 64.6 1.0 CA A:CYS92 4.0 57.6 1.0 CG A:HIS188 4.2 62.6 1.0 C A:THR91 4.5 61.4 1.0 CB A:THR91 4.5 61.8 1.0 CA A:CYS89 4.5 52.0 1.0 CA A:CYS73 4.6 55.1 1.0 CA A:THR91 4.8 56.3 1.0 N A:THR91 4.9 56.0 1.0 CA A:GLY86 4.9 52.3 1.0 C A:CYS89 4.9 56.0 1.0

T.Zeev-Ben-Mordehai, M.Weberru, M.Lorenz, J.Cheleski, T.Hellberg, C.Whittle, K.El Omari, D.Vasishtan, K.C.Dent, K.Harlos, K.Franzke, C.Hagen, B.G.Klupp, W.Antonin, T.C.Mettenleiter, K.Grunewald. Crystal Structure of the Herpesvirus Nuclear Egress Complex Provides Insights Into Inner Nuclear Membrane Remodeling. Cell Rep V. 13 2645 2015.
ISSN: ESSN 2211-1247
PubMed: 26711332
DOI: 10.1016/J.CELREP.2015.11.008