Zinc in PDB 5dhf: Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1

The structure of Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1, PDB code: 5dhf was solved by H.Y.Fung, Y.M.Chook, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.72 / 2.29
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	106.479, 106.479, 303.731, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 21.9

The structure of Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	2 atoms

The binding sites of Zinc atom in the Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1 (pdb code 5dhf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1, PDB code: 5dhf:

Zinc binding site 1 out of 1 in the Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1103 b:65.5 occ:0.35 SG C:CYS197 2.3 35.2 0.5 OG C:SER216 2.6 37.9 1.0 OH C:TYR220 2.7 39.8 1.0 SD C:MET156 3.0 54.8 1.0 CE2 C:TYR220 3.1 36.4 1.0 CZ C:TYR220 3.3 37.7 1.0 CB C:SER216 3.5 30.8 1.0 SG C:CYS197 4.0 32.5 0.5 CB C:CYS197 4.0 37.3 0.5 CE C:MET156 4.0 46.3 1.0 CB C:CYS197 4.1 37.2 0.5 CD1 C:LEU159 4.2 32.0 1.0 CD2 C:TYR220 4.4 34.5 1.0 CG2 C:ILE193 4.4 31.8 1.0 CG C:MET156 4.5 31.5 1.0 O C:THR213 4.5 29.5 1.0 CB C:LEU159 4.6 29.0 1.0 CG2 C:THR213 4.6 30.9 1.0 CE1 C:TYR220 4.6 34.8 1.0 CB C:MET156 4.7 31.0 1.0 CA C:MET156 4.8 29.9 1.0 CA C:CYS197 4.8 38.4 0.5 CA C:CYS197 4.8 38.4 0.5 CA C:SER216 4.8 28.5 1.0 C C:SER216 4.9 24.7 1.0 O C:ILE193 4.9 33.9 1.0 CA C:THR213 5.0 28.6 1.0 N C:LEU217 5.0 24.1 1.0

H.Y.Fung, S.C.Fu, C.A.Brautigam, Y.M.Chook. Structural Determinants of Nuclear Export Signal Orientation in Binding to Exportin CRM1. Elife V. 4 2015.
ISSN: ESSN 2050-084X
PubMed: 26349033
DOI: 10.7554/ELIFE.10034