Zinc in PDB 5d88: The Structure of the U32 Peptidase MK0906

The structure of The Structure of the U32 Peptidase MK0906, PDB code: 5d88 was solved by U.Baumann, M.Schacherl, A.A.M.Monatda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.56 / 1.66
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	79.150, 79.150, 89.158, 90.00, 90.00, 120.00
R / Rfree (%)	13.3 / 15.2

The binding sites of Zinc atom in the The Structure of the U32 Peptidase MK0906 (pdb code 5d88). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of the U32 Peptidase MK0906, PDB code: 5d88:

Zinc binding site 1 out of 1 in the The Structure of the U32 Peptidase MK0906


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of the U32 Peptidase MK0906 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:23.7 occ:0.50 NE2 A:HIS189 2.0 22.8 1.0 SG A:CYS68 2.3 22.0 1.0 HB3 A:CYS68 2.9 26.1 1.0 CD2 A:HIS189 3.0 22.9 1.0 CE1 A:HIS189 3.0 25.3 1.0 HD2 A:HIS189 3.1 27.4 1.0 CB A:CYS68 3.1 21.7 1.0 HE1 A:HIS189 3.3 30.3 1.0 H A:GLY70 3.5 31.4 1.0 HB2 A:CYS68 3.6 26.1 1.0 HA2 A:GLY70 3.7 34.2 1.0 ND1 A:HIS189 4.1 24.1 1.0 CG A:HIS189 4.1 22.5 1.0 N A:GLY70 4.1 26.2 1.0 CA A:GLY70 4.3 28.5 1.0 HB3 A:ASN185 4.4 25.4 1.0 CA A:CYS68 4.5 22.7 1.0 C A:CYS68 4.6 22.3 1.0 HA3 A:GLY70 4.7 34.2 1.0 HA A:CYS68 4.9 27.2 1.0 HD1 A:HIS189 4.9 28.9 1.0 O A:CYS68 4.9 23.2 1.0

M.Schacherl, A.A.Montada, E.Brunstein, U.Baumann. The First Crystal Structure of the Peptidase Domain of the U32 Peptidase Family. Acta Crystallogr.,Sect.D V. 71 2505 2015.
ISSN: ESSN 1399-0047
PubMed: 26627657
DOI: 10.1107/S1399004715019549