Zinc in PDB 5bjs: Apo CTPRC2 in An Autoinhibited State

The structure of Apo CTPRC2 in An Autoinhibited State, PDB code: 5bjs was solved by M.A.Bratkowski, X.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.45 / 2.19
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	117.775, 137.897, 223.850, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 22.4

The binding sites of Zinc atom in the Apo CTPRC2 in An Autoinhibited State (pdb code 5bjs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Apo CTPRC2 in An Autoinhibited State, PDB code: 5bjs:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in the Apo CTPRC2 in An Autoinhibited State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Apo CTPRC2 in An Autoinhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn8001 b:31.2 occ:1.00 SG B:CYS760 2.3 31.3 1.0 SG B:CYS748 2.3 31.0 1.0 SG B:CYS755 2.3 31.9 1.0 SG B:CYS727 2.4 32.8 1.0 CB B:CYS755 3.1 27.9 1.0 CB B:CYS760 3.2 30.4 1.0 CB B:CYS727 3.3 33.0 1.0 CB B:CYS748 3.4 28.8 1.0 N B:CYS727 3.5 35.9 1.0 CA B:CYS755 3.6 27.3 1.0 ZN B:ZN8003 3.8 32.3 1.0 ZN B:ZN8002 3.9 32.7 1.0 CA B:CYS727 3.9 32.6 1.0 O B:HOH8329 4.3 31.5 1.0 SG B:CYS746 4.3 36.1 1.0 N B:CYS755 4.5 26.6 1.0 CA B:CYS760 4.5 34.7 1.0 C B:GLY726 4.5 35.7 1.0 N B:ASP756 4.6 27.6 1.0 C B:CYS755 4.7 27.0 1.0 CA B:CYS748 4.7 29.1 1.0 SG B:CYS763 4.7 31.8 1.0 SG B:CYS736 4.7 31.4 1.0 C B:CYS727 4.8 39.0 1.0 CA B:GLY726 4.9 33.9 1.0 N B:CYS748 4.9 30.2 1.0 O B:CYS727 4.9 34.7 1.0

Zinc binding site 2 out of 8 in the Apo CTPRC2 in An Autoinhibited State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Apo CTPRC2 in An Autoinhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn8002 b:32.7 occ:1.00 SG B:CYS763 2.3 31.8 1.0 SG B:CYS784 2.4 29.3 1.0 SG B:CYS755 2.4 31.9 1.0 SG B:CYS736 2.4 31.4 1.0 CB B:CYS784 3.0 28.8 1.0 CB B:CYS763 3.2 31.4 1.0 CB B:CYS736 3.3 29.5 1.0 CB B:CYS755 3.3 27.9 1.0 ZN B:ZN8003 3.9 32.3 1.0 ZN B:ZN8001 3.9 31.2 1.0 CA B:CYS784 4.0 29.1 1.0 SG B:CYS727 4.0 32.8 1.0 CB B:ALA765 4.3 28.5 1.0 CB B:CYS760 4.6 30.4 1.0 CA B:CYS763 4.6 34.8 1.0 CB B:ASN786 4.7 26.9 1.0 CA B:CYS736 4.7 30.1 1.0 CA B:CYS755 4.8 27.3 1.0 C B:CYS784 4.9 29.1 1.0 O B:CYS763 4.9 34.6 1.0 C B:CYS763 4.9 34.8 1.0 N B:CYS784 5.0 29.8 1.0

Zinc binding site 3 out of 8 in the Apo CTPRC2 in An Autoinhibited State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Apo CTPRC2 in An Autoinhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn8003 b:32.3 occ:1.00 SG B:CYS727 2.3 32.8 1.0 SG B:CYS729 2.3 33.3 1.0 SG B:CYS746 2.3 36.1 1.0 SG B:CYS736 2.3 31.4 1.0 CB B:CYS729 3.1 39.2 1.0 CB B:CYS746 3.1 31.1 1.0 CB B:CYS727 3.2 33.0 1.0 CB B:CYS736 3.3 29.5 1.0 CA B:CYS736 3.8 30.1 1.0 ZN B:ZN8001 3.8 31.2 1.0 ZN B:ZN8002 3.9 32.7 1.0 CA B:CYS746 3.9 32.0 1.0 SG B:CYS755 4.0 31.9 1.0 N B:CYS729 4.3 34.3 1.0 CA B:CYS729 4.3 35.1 1.0 N B:CYS736 4.3 32.3 1.0 CA B:CYS727 4.6 32.6 1.0 C B:CYS746 4.7 33.7 1.0 CB B:CYS763 4.9 31.4 1.0 C B:CYS727 4.9 39.0 1.0 CB B:CYS748 4.9 28.8 1.0 SG B:CYS763 4.9 31.8 1.0 SG B:CYS748 5.0 31.0 1.0 N B:ILE747 5.0 32.1 1.0

Zinc binding site 4 out of 8 in the Apo CTPRC2 in An Autoinhibited State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Apo CTPRC2 in An Autoinhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn8004 b:42.5 occ:1.00 NE2 B:HIS687 2.0 46.1 1.0 SG B:CYS685 2.1 49.3 1.0 SG B:CYS691 2.2 43.0 1.0 SG B:CYS697 2.3 45.3 1.0 CE1 B:HIS687 3.0 50.7 1.0 CD2 B:HIS687 3.0 48.2 1.0 CB B:CYS697 3.1 44.7 1.0 CB B:CYS691 3.1 37.1 1.0 CB B:CYS685 3.4 53.1 1.0 CA B:CYS691 3.6 43.9 1.0 ZN B:ZN8006 3.8 37.8 1.0 ZN B:ZN8005 4.0 41.0 1.0 CA B:CYS697 4.1 50.9 1.0 ND1 B:HIS687 4.1 47.3 1.0 SG B:CYS709 4.1 38.3 1.0 CG B:HIS687 4.1 47.8 1.0 CA B:CYS685 4.4 39.3 1.0 O B:HOH8437 4.4 35.9 1.0 N B:CYS691 4.5 39.4 1.0 SG B:CYS699 4.7 41.4 1.0 C B:CYS691 4.7 41.5 1.0 C B:CYS697 4.8 46.7 1.0 O B:HOH8300 4.9 43.4 1.0 SG B:CYS715 4.9 35.0 1.0

Zinc binding site 5 out of 8 in the Apo CTPRC2 in An Autoinhibited State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Apo CTPRC2 in An Autoinhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn8005 b:41.0 occ:1.00 SG B:CYS720 2.2 36.9 1.0 SG B:CYS715 2.3 35.0 1.0 SG B:CYS709 2.3 38.3 1.0 SG B:CYS691 2.4 43.0 1.0 CB B:CYS709 3.2 37.4 1.0 CB B:CYS720 3.2 37.8 1.0 CB B:CYS691 3.3 37.1 1.0 CB B:CYS715 3.3 36.4 1.0 ZN B:ZN8006 3.9 37.8 1.0 ZN B:ZN8004 4.0 42.5 1.0 SG B:CYS685 4.1 49.3 1.0 O B:HOH8279 4.3 50.1 1.0 CB B:LEU722 4.6 38.6 1.0 CA B:CYS709 4.7 39.6 1.0 CA B:CYS720 4.7 51.8 1.0 CA B:CYS691 4.7 43.9 1.0 CA B:CYS715 4.8 45.8 1.0 O B:HOH8505 4.8 52.8 1.0 CB B:CYS713 5.0 31.9 1.0

Zinc binding site 6 out of 8 in the Apo CTPRC2 in An Autoinhibited State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Apo CTPRC2 in An Autoinhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn8006 b:37.8 occ:1.00 SG B:CYS685 2.2 49.3 1.0 SG B:CYS699 2.2 41.4 1.0 SG B:CYS709 2.2 38.3 1.0 SG B:CYS713 2.4 34.7 1.0 CB B:CYS709 3.2 37.4 1.0 CB B:CYS685 3.2 53.1 1.0 CB B:CYS713 3.2 31.9 1.0 CB B:CYS699 3.3 42.8 1.0 CA B:CYS709 3.6 39.6 1.0 ZN B:ZN8004 3.8 42.5 1.0 N B:CYS685 3.9 38.3 1.0 ZN B:ZN8005 3.9 41.0 1.0 CA B:CYS685 4.1 39.3 1.0 O B:HOH8164 4.1 37.6 1.0 SG B:CYS697 4.2 45.3 1.0 SG B:CYS715 4.4 35.0 1.0 SG B:CYS691 4.5 43.0 1.0 CA B:CYS713 4.6 38.9 1.0 N B:CYS709 4.6 35.4 1.0 C B:CYS709 4.6 44.9 1.0 N B:GLU710 4.6 41.1 1.0 CA B:CYS699 4.7 44.8 1.0 N B:CYS699 4.9 40.7 1.0

Zinc binding site 7 out of 8 in the Apo CTPRC2 in An Autoinhibited State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Apo CTPRC2 in An Autoinhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn8007 b:28.3 occ:1.00 ND1 B:HIS518 2.1 26.1 1.0 SG B:CYS511 2.3 28.3 1.0 SG B:CYS508 2.3 29.2 1.0 SG B:CYS516 2.3 26.0 1.0 CE1 B:HIS518 3.0 30.7 1.0 CB B:CYS508 3.0 22.9 1.0 CG B:HIS518 3.1 32.2 1.0 CB B:CYS516 3.1 22.1 1.0 CB B:CYS511 3.4 21.8 1.0 CB B:HIS518 3.5 25.0 1.0 O B:HOH8449 3.8 27.2 1.0 N B:CYS511 3.9 24.3 1.0 N B:HIS518 4.0 26.1 1.0 NE2 B:HIS518 4.1 28.4 1.0 CA B:CYS511 4.2 26.3 1.0 CD2 B:HIS518 4.2 24.1 1.0 N B:GLU517 4.3 23.0 1.0 CA B:HIS518 4.4 25.8 1.0 CA B:CYS516 4.5 28.2 1.0 CA B:CYS508 4.5 28.1 1.0 O B:HOH8405 4.6 29.6 1.0 C B:CYS516 4.6 33.8 1.0 C B:CYS511 4.7 32.0 1.0 CB B:ILE510 4.8 30.2 1.0 N B:PHE512 4.8 29.8 1.0 O B:SER513 4.8 26.9 1.0 O B:HOH8183 5.0 32.3 1.0 C B:ILE510 5.0 28.8 1.0 N B:SER513 5.0 34.5 1.0

Zinc binding site 8 out of 8 in the Apo CTPRC2 in An Autoinhibited State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Apo CTPRC2 in An Autoinhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn8008 b:67.0 occ:1.00 SG B:CYS570 2.2 61.4 1.0 SG B:CYS625 2.3 75.9 1.0 SG B:CYS615 2.4 73.8 1.0 SG B:CYS574 2.6 71.0 1.0 CB B:CYS625 3.2 74.2 1.0 CB B:CYS615 3.4 58.5 1.0 CA B:CYS574 3.4 76.8 1.0 CB B:CYS574 3.4 78.2 1.0 CA B:CYS615 3.7 56.0 1.0 CB B:CYS570 3.7 69.2 1.0 N B:TYR575 3.8 76.0 1.0 N B:CYS615 4.1 56.3 1.0 C B:CYS574 4.1 76.5 1.0 CD1 B:TYR575 4.1 96.6 1.0 N B:CYS570 4.3 86.3 1.0 N B:CYS574 4.5 76.2 1.0 CA B:CYS570 4.6 80.3 1.0 CA B:CYS625 4.6 75.2 1.0 CE1 B:TYR575 4.8 96.0 1.0 C B:GLU614 4.9 57.6 1.0 O B:CYS570 4.9 83.2 1.0

M.Bratkowski, X.Yang, X.Liu. Polycomb Repressive Complex 2 in An Autoinhibited State. J. Biol. Chem. V. 292 13323 2017.
ISSN: ESSN 1083-351X
PubMed: 28607149
DOI: 10.1074/JBC.M117.787572