Zinc in PDB 5ax7: Yeast Pyruvyltransferase PVG1P

The structure of Yeast Pyruvyltransferase PVG1P, PDB code: 5ax7 was solved by M.Kanekiyo, K.Yoritsune, S.Yoshinaga, Y.Higuchi, K.Takegawa, Y.Kakuta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.99 / 2.46
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	85.529, 85.529, 93.611, 90.00, 90.00, 120.00
R / Rfree (%)	16.7 / 18.3

The binding sites of Zinc atom in the Yeast Pyruvyltransferase PVG1P (pdb code 5ax7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Yeast Pyruvyltransferase PVG1P, PDB code: 5ax7:

Zinc binding site 1 out of 1 in the Yeast Pyruvyltransferase PVG1P


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yeast Pyruvyltransferase PVG1P within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:51.1 occ:1.00 OE2 B:GLU131 2.1 45.2 1.0 NE2 B:HIS170 2.4 40.6 1.0 OE1 B:GLU131 2.7 48.5 1.0 CD B:GLU131 2.7 46.5 1.0 CD2 B:HIS170 2.9 40.0 1.0 CE1 B:HIS170 3.6 40.9 1.0 CG B:GLU131 4.1 47.1 1.0 CG B:HIS170 4.2 39.7 1.0 CD1 B:LEU174 4.4 46.5 1.0 ND1 B:HIS170 4.5 40.7 1.0

Y.Higuchi, S.Yoshinaga, K.Yoritsune, H.Tateno, J.Hirabayashi, S.Nakakita, M.Kanekiyo, Y.Kakuta, K.Takegawa. A Rationally Engineered Yeast Pyruvyltransferase PVG1P Introduces Sialylation-Like Properties in Neo-Human-Type Complex Oligosaccharide Sci Rep V. 6 26349 2016.
ISSN: ESSN 2045-2322
PubMed: 27194449
DOI: 10.1038/SREP26349