Zinc in PDB 4zlh: Structure of the Lapb Cytoplasmic Domain at 2 Angstroms

The structure of Structure of the Lapb Cytoplasmic Domain at 2 Angstroms, PDB code: 4zlh was solved by C.C.Prince, Z.Jia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.08 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	38.310, 152.250, 65.470, 90.00, 93.91, 90.00
R / Rfree (%)	20.3 / 25.5

The binding sites of Zinc atom in the Structure of the Lapb Cytoplasmic Domain at 2 Angstroms (pdb code 4zlh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Lapb Cytoplasmic Domain at 2 Angstroms, PDB code: 4zlh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Lapb Cytoplasmic Domain at 2 Angstroms


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Lapb Cytoplasmic Domain at 2 Angstroms within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:49.5 occ:1.00 SG A:CYS371 2.2 47.7 1.0 SG A:CYS374 2.3 54.2 1.0 SG A:CYS360 2.4 69.0 1.0 SG A:CYS357 2.4 52.3 1.0 CB A:CYS371 3.2 48.0 1.0 CB A:CYS357 3.2 46.8 1.0 CB A:CYS374 3.3 55.2 1.0 N A:CYS374 3.6 61.4 1.0 CB A:CYS360 3.6 70.9 1.0 N A:CYS360 4.0 56.2 1.0 CA A:CYS374 4.0 53.9 1.0 CB A:SER373 4.3 64.0 1.0 CB A:LYS359 4.3 64.7 1.0 CB A:PHE362 4.4 56.5 1.0 CA A:CYS360 4.4 61.9 1.0 OG1 A:THR379 4.6 49.4 1.0 CA A:CYS371 4.6 48.8 1.0 CA A:CYS357 4.7 59.0 1.0 C A:SER373 4.7 60.5 1.0 C A:CYS374 4.7 54.6 1.0 OG A:SER373 4.8 64.1 1.0 N A:ARG375 4.9 59.6 1.0 CA A:SER373 4.9 59.6 1.0 C A:LYS359 4.9 65.2 1.0 CG A:LYS359 4.9 70.8 1.0 N A:PHE362 5.0 53.8 1.0 N A:SER373 5.0 56.4 1.0 C A:CYS360 5.0 70.0 1.0

Zinc binding site 2 out of 2 in the Structure of the Lapb Cytoplasmic Domain at 2 Angstroms


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Lapb Cytoplasmic Domain at 2 Angstroms within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:30.4 occ:1.00 SG B:CYS374 2.2 31.6 1.0 SG B:CYS357 2.2 33.8 1.0 SG B:CYS360 2.3 46.2 1.0 SG B:CYS371 2.3 31.6 1.0 CB B:CYS357 3.2 37.2 1.0 CB B:CYS360 3.2 38.8 1.0 CB B:CYS374 3.3 48.1 1.0 CB B:CYS371 3.3 33.5 1.0 N B:CYS374 3.6 41.1 1.0 N B:CYS360 3.8 46.2 1.0 CA B:CYS374 4.0 39.2 1.0 CA B:CYS360 4.1 51.5 1.0 CB B:SER373 4.3 51.2 1.0 OG1 B:THR379 4.5 29.7 1.0 CB B:LYS359 4.5 37.5 1.0 CB B:PHE362 4.5 43.6 1.0 CA B:CYS357 4.6 32.8 1.0 C B:SER373 4.7 49.2 1.0 CA B:CYS371 4.8 31.6 1.0 C B:CYS374 4.8 39.3 1.0 N B:GLY361 4.8 57.2 1.0 C B:CYS360 4.9 58.2 1.0 C B:LYS359 4.9 43.9 1.0 OG B:SER373 4.9 47.2 1.0 CA B:SER373 4.9 46.6 1.0 N B:SER373 4.9 44.4 1.0 N B:ARG375 5.0 36.6 1.0 N B:PHE362 5.0 34.4 1.0

C.Prince, Z.Jia. An Unexpected Duo: Rubredoxin Binds Nine Tpr Motifs to Form Lapb, An Essential Regulator of Lipopolysaccharide Synthesis. Structure V. 23 1500 2015.
ISSN: ISSN 0969-2126
PubMed: 26190574
DOI: 10.1016/J.STR.2015.06.011