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Zinc in PDB 4z8i: Crystal Structure of Branchiostoma Belcheri Tsingtauense Peptidoglycan Recognition Protein 3

Enzymatic activity of Crystal Structure of Branchiostoma Belcheri Tsingtauense Peptidoglycan Recognition Protein 3

All present enzymatic activity of Crystal Structure of Branchiostoma Belcheri Tsingtauense Peptidoglycan Recognition Protein 3:
3.5.1.28;

Protein crystallography data

The structure of Crystal Structure of Branchiostoma Belcheri Tsingtauense Peptidoglycan Recognition Protein 3, PDB code: 4z8i was solved by W.J.Wang, W.Cheng, Y.L.Jiang, M.Luo, D.D.Cao, C.B.Chi, H.B.Yang, Y.Chen, C.Z.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.60 / 2.70
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 77.206, 77.206, 82.607, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 20.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Branchiostoma Belcheri Tsingtauense Peptidoglycan Recognition Protein 3 (pdb code 4z8i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Branchiostoma Belcheri Tsingtauense Peptidoglycan Recognition Protein 3, PDB code: 4z8i:

Zinc binding site 1 out of 1 in 4z8i

Go back to Zinc Binding Sites List in 4z8i
Zinc binding site 1 out of 1 in the Crystal Structure of Branchiostoma Belcheri Tsingtauense Peptidoglycan Recognition Protein 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Branchiostoma Belcheri Tsingtauense Peptidoglycan Recognition Protein 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:44.9
occ:0.95
 O A:HOH411 2.0 39.1 1.0
ND1 A:HIS202 2.0 53.6 1.0
ND1 A:HIS93 2.0 41.7 1.0
SG A:CYS210 2.3 40.5 1.0
CG A:HIS202 2.8 49.4 1.0
CE1 A:HIS93 2.8 33.6 1.0
CE1 A:HIS202 2.9 59.8 1.0
CB A:CYS210 3.0 24.3 1.0
CG A:HIS93 3.1 32.5 1.0
CB A:HIS202 3.2 35.0 1.0
CB A:HIS93 3.6 26.3 1.0
O A:HOH421 3.7 43.9 1.0
CD2 A:HIS202 3.9 47.1 1.0
NE2 A:HIS202 3.9 42.1 1.0
NE2 A:HIS93 4.0 30.8 1.0
CA A:HIS93 4.0 31.4 1.0
CD2 A:HIS93 4.1 31.7 1.0
O A:HOH466 4.2 43.8 1.0
CA A:CYS210 4.5 40.8 1.0
N A:HIS94 4.6 30.8 1.0
OG1 A:THR208 4.6 68.7 1.0
CA A:HIS202 4.7 27.9 1.0
O A:HIS150 4.7 36.3 1.0
O A:HIS94 4.8 30.9 1.0
O A:ILE92 4.9 33.2 1.0
C A:HIS93 4.9 38.8 1.0
C A:CYS210 5.0 42.5 1.0

Reference:

W.J.Wang, W.Cheng, M.Luo, Q.Yan, H.M.Yu, Q.Li, D.D.Cao, S.Huang, A.Xu, R.A.Mariuzza, Y.Chen, C.Z.Zhou. Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BBTPGRP3 Via Fusion with A Chitin Binding Domain Plos One V. 10 40953 2015.
ISSN: ESSN 1932-6203
PubMed: 26479246
DOI: 10.1371/JOURNAL.PONE.0140953
Page generated: Wed Dec 16 05:58:56 2020

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