Zinc in PDB 4z60: The 2.5-Angstrom of Crystal Structure of Zn(2+)-Bound Pqqb From Pseudomonas Putida

The structure of The 2.5-Angstrom of Crystal Structure of Zn(2+)-Bound Pqqb From Pseudomonas Putida, PDB code: 4z60 was solved by X.Tu, C.M.Wilmot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.31 / 2.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	86.186, 86.186, 107.224, 90.00, 90.00, 90.00
R / Rfree (%)	16.1 / 21.3

The binding sites of Zinc atom in the The 2.5-Angstrom of Crystal Structure of Zn(2+)-Bound Pqqb From Pseudomonas Putida (pdb code 4z60). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The 2.5-Angstrom of Crystal Structure of Zn(2+)-Bound Pqqb From Pseudomonas Putida, PDB code: 4z60:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The 2.5-Angstrom of Crystal Structure of Zn(2+)-Bound Pqqb From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The 2.5-Angstrom of Crystal Structure of Zn(2+)-Bound Pqqb From Pseudomonas Putida within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:34.9 occ:1.00 OD1 A:ASN272 2.1 27.1 1.0 SG A:CYS19 2.3 33.8 1.0 SG A:CYS24 2.3 34.6 1.0 SG A:CYS21 2.4 34.1 1.0 CG A:ASN272 3.1 29.8 1.0 CB A:CYS24 3.2 31.5 1.0 CB A:CYS19 3.3 25.5 1.0 CB A:CYS21 3.4 29.0 1.0 CB A:ASN272 3.6 25.2 1.0 N A:CYS21 3.9 36.3 1.0 O A:ASN272 3.9 42.8 1.0 N A:CYS24 4.0 33.0 1.0 C A:ASN272 4.1 39.6 1.0 CA A:CYS21 4.2 35.5 1.0 ND2 A:ASN272 4.2 30.6 1.0 CA A:CYS24 4.2 35.1 1.0 CG2 A:THR273 4.3 32.1 1.0 N A:THR273 4.5 36.3 1.0 C A:CYS19 4.5 29.8 1.0 CA A:ASN272 4.5 32.4 1.0 CA A:CYS19 4.5 32.9 1.0 O A:CYS19 4.7 32.1 1.0 C A:CYS21 4.8 38.3 1.0 N A:ASN20 4.8 34.0 1.0 CA A:THR273 4.8 38.6 1.0 O A:CYS21 4.9 37.4 1.0

Zinc binding site 2 out of 2 in the The 2.5-Angstrom of Crystal Structure of Zn(2+)-Bound Pqqb From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The 2.5-Angstrom of Crystal Structure of Zn(2+)-Bound Pqqb From Pseudomonas Putida within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:59.1 occ:0.77 NE2 A:HIS269 2.4 35.6 1.0 OD2 A:ASP92 2.4 69.3 1.0 NE2 A:HIS93 2.5 43.2 1.0 O A:HOH608 2.5 37.2 1.0 CD2 A:HIS269 3.1 37.7 1.0 CE1 A:HIS93 3.3 38.3 1.0 CG A:ASP92 3.3 70.0 1.0 CD2 A:HIS93 3.5 39.5 1.0 CE1 A:HIS269 3.5 35.5 1.0 N A:GLY11 3.8 29.9 1.0 OD1 A:ASP92 3.9 81.7 1.0 O A:HOH616 4.0 42.1 1.0 O A:HOH555 4.2 50.8 1.0 CG A:HIS269 4.3 34.5 1.0 CA A:GLY11 4.4 28.0 1.0 ND1 A:HIS93 4.4 36.1 1.0 CB A:ASP92 4.4 54.5 1.0 C A:ALA10 4.4 28.1 1.0 OE1 A:GLN90 4.5 51.6 1.0 ND1 A:HIS269 4.5 35.6 1.0 CG A:HIS93 4.5 35.2 1.0 CA A:ALA10 4.6 29.6 1.0

X.Tu, C.M.Wimot. Crystal Structures Reveal Metal-Binding Plasticity at the Active Site of Pqqb To Be Published.