Atomistry » Zinc » PDB 4xo3-4y87 » 4y0x
Atomistry »
  Zinc »
    PDB 4xo3-4y87 »
      4y0x »

Zinc in PDB 4y0x: Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp

Enzymatic activity of Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp

All present enzymatic activity of Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp, PDB code: 4y0x was solved by M.N.Lisa, P.M.Alzari, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.61 / 1.74
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 75.920, 37.250, 108.520, 90.00, 97.74, 90.00
R / Rfree (%) 19.7 / 20.9

Other elements in 4y0x:

The structure of Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp (pdb code 4y0x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp, PDB code: 4y0x:

Zinc binding site 1 out of 1 in 4y0x

Go back to Zinc Binding Sites List in 4y0x
Zinc binding site 1 out of 1 in the Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the S/T Protein Kinase Pkng From Mycobacterium Tuberculosis in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:26.5
occ:1.00
 SG A:CYS128 2.3 28.4 1.0
SG A:CYS109 2.3 30.8 1.0
SG A:CYS131 2.3 29.8 1.0
SG A:CYS106 2.5 26.2 1.0
CB A:CYS128 3.1 23.7 1.0
CB A:CYS106 3.2 21.2 1.0
CB A:CYS109 3.2 30.3 1.0
CB A:CYS131 3.4 28.7 1.0
N A:CYS109 3.7 30.8 1.0
N A:CYS131 3.8 30.4 1.0
CA A:CYS109 4.0 31.0 1.0
CA A:CYS131 4.1 29.4 1.0
CA A:CYS128 4.5 22.4 1.0
CA A:CYS106 4.7 20.6 1.0
CB A:ASN108 4.7 29.2 1.0
C A:CYS109 4.8 33.6 1.0
C A:ASN108 4.8 35.9 1.0
CB A:TYR130 4.8 32.9 1.0
O A:HOH642 4.8 36.9 1.0
C A:TYR130 4.8 37.6 1.0
C A:CYS131 4.8 29.7 1.0
CD2 A:TYR130 4.9 39.2 1.0
N A:GLY110 4.9 26.7 1.0
ND2 A:ASN108 4.9 39.4 1.0
CB A:SER133 4.9 25.3 1.0
N A:GLY132 4.9 26.6 1.0
N A:SER133 5.0 23.3 1.0

Reference:

M.N.Lisa, M.Gil, G.Andre-Leroux, N.Barilone, R.Duran, R.M.Biondi, P.M.Alzari. Molecular Basis of the Activity and the Regulation of the Eukaryotic-Like S/T Protein Kinase Pkng From Mycobacterium Tuberculosis. Structure 2015.
ISSN: ISSN 0969-2126
PubMed: 25960409
DOI: 10.1016/J.STR.2015.04.001
Page generated: Sun Oct 27 10:54:47 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy