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Zinc in PDB 4xn7: Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid

Enzymatic activity of Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid

All present enzymatic activity of Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid:
3.4.11.2;

Protein crystallography data

The structure of Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid, PDB code: 4xn7 was solved by A.Addlagatta, R.Gumpena, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.25 / 2.22
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 120.690, 120.690, 170.460, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 24.6

Other elements in 4xn7:

The structure of Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid (pdb code 4xn7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid, PDB code: 4xn7:

Zinc binding site 1 out of 1 in 4xn7

Go back to Zinc Binding Sites List in 4xn7
Zinc binding site 1 out of 1 in the Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3- Diaminopropionic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:33.0
occ:1.00
 OE1 A:GLU320 2.1 13.8 1.0
NE2 A:HIS297 2.2 16.1 1.0
O A:DPP902 2.3 23.7 1.0
NE2 A:HIS301 2.4 13.4 1.0
C A:DPP902 2.7 26.8 1.0
OXT A:DPP902 2.8 25.0 1.0
CD A:GLU320 2.8 11.5 1.0
OE2 A:GLU320 2.9 11.0 1.0
CD2 A:HIS297 3.0 16.1 1.0
CD2 A:HIS301 3.2 13.4 1.0
CE1 A:HIS297 3.3 16.7 1.0
CE1 A:HIS301 3.4 13.7 1.0
NG A:DPP902 3.4 26.7 1.0
CA A:DPP902 3.9 28.1 1.0
O A:HOH1032 4.0 28.9 1.0
OH A:TYR381 4.1 18.1 1.0
CB A:DPP902 4.1 26.2 1.0
CE2 A:TYR381 4.1 16.0 1.0
CG A:GLU320 4.2 11.1 1.0
CG A:HIS297 4.2 15.8 1.0
ND1 A:HIS297 4.3 16.9 1.0
OE1 A:GLU298 4.3 16.1 1.0
CG A:HIS301 4.4 13.8 1.0
OE1 A:GLU264 4.5 14.1 1.0
CZ A:TYR381 4.5 16.7 1.0
ND1 A:HIS301 4.5 13.6 1.0
CB A:GLU320 4.7 10.7 1.0
CG2 A:THR323 4.8 12.6 1.0
CA A:GLU320 4.9 10.7 1.0
OE2 A:GLU298 4.9 15.1 1.0
OE2 A:GLU264 4.9 13.6 1.0
CD A:GLU264 4.9 13.6 1.0

Reference:

A.Addlagatta, R.Gumpena. Crystal Structure of E. Coli Aminopeptidase N in Complex with L-2,3-Diaminopropionic Acid To Be Published.
Page generated: Sun Oct 27 10:42:07 2024

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