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Zinc in PDB 4xmz: Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid

Enzymatic activity of Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid

All present enzymatic activity of Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid:
3.4.11.2;

Protein crystallography data

The structure of Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid, PDB code: 4xmz was solved by A.Addlagatta, R.Gumpena, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.81 / 2.15
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 120.638, 120.638, 171.304, 90.00, 90.00, 120.00
R / Rfree (%) 14.3 / 18.1

Other elements in 4xmz:

The structure of Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid also contains other interesting chemical elements:

Sodium (Na) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid (pdb code 4xmz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid, PDB code: 4xmz:

Zinc binding site 1 out of 1 in 4xmz

Go back to Zinc Binding Sites List in 4xmz
Zinc binding site 1 out of 1 in the Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:15.8
occ:1.00
O A:DAB910 1.8 24.5 1.0
OE1 A:GLU320 2.0 12.1 1.0
NE2 A:HIS297 2.1 14.8 1.0
NE2 A:HIS301 2.1 13.6 1.0
CD A:GLU320 2.7 12.5 1.0
C A:DAB910 2.8 27.5 1.0
OE2 A:GLU320 2.8 11.7 1.0
CE1 A:HIS297 3.0 14.7 1.0
CE1 A:HIS301 3.1 12.9 1.0
CD2 A:HIS301 3.1 12.2 1.0
CD2 A:HIS297 3.1 15.2 1.0
OXT A:DAB910 3.3 33.5 1.0
CA A:DAB910 3.9 31.4 1.0
CE2 A:TYR381 4.0 16.6 1.0
N A:DAB910 4.0 23.3 1.0
OH A:TYR381 4.0 17.2 1.0
ND1 A:HIS297 4.1 14.9 1.0
CG A:GLU320 4.2 12.3 1.0
ND1 A:HIS301 4.2 11.9 1.0
CG A:HIS297 4.2 15.5 1.0
CG A:HIS301 4.2 12.8 1.0
CZ A:TYR381 4.4 17.1 1.0
CG2 A:THR323 4.5 12.8 1.0
OE1 A:GLU264 4.5 15.2 1.0
OE1 A:GLU298 4.6 18.8 1.0
CB A:THR323 4.7 12.8 1.0
CB A:GLU320 4.7 12.3 1.0
CA A:GLU320 4.7 13.3 1.0
O A:HOH1867 4.9 48.8 1.0
OE2 A:GLU264 4.9 17.3 1.0
CD A:GLU264 5.0 15.9 1.0
CD2 A:TYR381 5.0 16.1 1.0
OE2 A:GLU298 5.0 18.2 1.0

Reference:

A.Addlagatta, R.Gumpena. Crystal Structure of MET260ALA Mutant of E. Coli Aminopeptidase N in Complex with 2,4-Diaminobutyric Acid To Be Published.
Page generated: Wed Dec 16 05:55:02 2020

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