Atomistry » Zinc » PDB 4wnt-4x3o » 4wsq
Atomistry »
  Zinc »
    PDB 4wnt-4x3o »
      4wsq »

Zinc in PDB 4wsq: Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor

Enzymatic activity of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor

All present enzymatic activity of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor, PDB code: 4wsq was solved by F.J.Sorrell, J.M.Elkins, T.Krojer, E.Williams, K.Abdul, O.Gileadi, F.Vondelft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.33 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.660, 71.320, 183.640, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor (pdb code 4wsq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor, PDB code: 4wsq:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 4wsq

Go back to Zinc Binding Sites List in 4wsq
Zinc binding site 1 out of 6 in the Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:36.0
occ:1.00
OD1 A:ASP186 2.0 37.1 1.0
ND1 A:HIS189 2.0 34.3 1.0
ND1 A:HIS185 2.1 35.1 1.0
CE1 A:HIS189 2.9 32.3 1.0
CG A:ASP186 3.0 49.5 1.0
CE1 A:HIS185 3.0 35.1 1.0
CG A:HIS185 3.1 35.0 1.0
CG A:HIS189 3.1 32.5 1.0
OD2 A:ASP186 3.3 56.0 1.0
CB A:HIS185 3.4 33.9 1.0
CB A:HIS189 3.6 28.5 1.0
NE2 A:HIS189 4.0 34.8 1.0
N A:ASP186 4.1 32.7 1.0
NE2 A:HIS185 4.1 35.6 1.0
CD2 A:HIS185 4.2 33.2 1.0
CD2 A:HIS189 4.2 32.5 1.0
C A:HIS185 4.2 33.6 1.0
CB A:ASP186 4.4 54.4 1.0
CA A:HIS185 4.5 31.9 1.0
O A:HIS185 4.6 39.4 1.0
CA A:ASP186 4.7 36.0 1.0
O A:HIS189 5.0 28.7 1.0

Zinc binding site 2 out of 6 in 4wsq

Go back to Zinc Binding Sites List in 4wsq
Zinc binding site 2 out of 6 in the Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:31.3
occ:0.68
O A:HOH511 2.1 40.0 1.0
OD2 A:ASP127 2.1 52.0 1.0
NE2 A:HIS185 2.1 35.6 1.0
OD1 A:ASP127 2.6 53.0 1.0
CG A:ASP127 2.7 49.7 1.0
CD2 A:HIS185 2.9 33.2 1.0
CE1 A:HIS185 3.2 35.1 1.0
O A:PHE128 3.9 39.2 1.0
CG A:HIS185 4.1 35.0 1.0
ND1 A:HIS185 4.2 35.1 1.0
O A:HOH506 4.2 30.8 1.0
CB A:ASP127 4.2 37.3 1.0
C A:PHE128 4.8 38.3 1.0
N A:PHE128 5.0 34.9 1.0

Zinc binding site 3 out of 6 in 4wsq

Go back to Zinc Binding Sites List in 4wsq
Zinc binding site 3 out of 6 in the Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:36.5
occ:0.65
O A:HOH571 2.1 38.7 1.0
OD2 A:ASP176 2.2 40.4 1.0
OD2 A:ASP194 2.3 39.0 1.0
CG A:ASP194 3.2 34.9 1.0
CG A:ASP176 3.2 40.1 1.0
OD1 A:ASP194 3.4 32.4 1.0
CB A:ASP176 3.6 32.5 1.0
OG A:SER197 4.0 29.1 1.0
NZ A:LYS178 4.3 44.0 1.0
OD1 A:ASP176 4.4 39.3 1.0
ND2 A:ASN181 4.4 31.6 1.0
O A:HOH557 4.4 33.7 1.0
CB A:ASP194 4.5 29.2 1.0
CE A:LYS178 4.6 43.7 1.0
CB A:SER197 4.8 28.5 1.0

Zinc binding site 4 out of 6 in 4wsq

Go back to Zinc Binding Sites List in 4wsq
Zinc binding site 4 out of 6 in the Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:46.1
occ:1.00
OD2 B:ASP215 2.0 44.1 1.0
CG B:ASP215 2.7 42.5 1.0
OD1 B:ASP215 2.7 41.8 1.0
CB B:ASP215 4.2 36.9 1.0
O B:HOH507 4.8 54.9 1.0
O B:ASN211 4.8 47.4 1.0

Zinc binding site 5 out of 6 in 4wsq

Go back to Zinc Binding Sites List in 4wsq
Zinc binding site 5 out of 6 in the Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:34.2
occ:0.54
OE2 B:GLU214 1.9 54.6 1.0
OE1 B:GLU214 2.2 53.4 1.0
CD B:GLU214 2.3 50.3 1.0
CG B:GLU214 3.8 45.2 1.0
O B:HOH514 4.1 41.8 1.0
O B:HOH507 4.5 54.9 1.0
OD1 B:ASN211 4.5 62.3 1.0
CB B:GLU214 4.7 40.4 1.0

Zinc binding site 6 out of 6 in 4wsq

Go back to Zinc Binding Sites List in 4wsq
Zinc binding site 6 out of 6 in the Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in Complex with Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn403

b:54.1
occ:0.70
OD2 B:ASP176 2.2 40.8 1.0
OD2 B:ASP194 2.2 49.8 1.0
O B:HOH571 2.3 41.9 1.0
CG B:ASP176 3.2 43.8 1.0
CG B:ASP194 3.2 46.5 1.0
OD1 B:ASP194 3.6 39.0 1.0
CB B:ASP176 3.6 41.0 1.0
OG B:SER197 3.8 34.3 1.0
O B:HOH555 4.1 38.3 1.0
ND2 B:ASN181 4.3 29.9 1.0
OD1 B:ASP176 4.3 42.7 1.0
O B:HOH628 4.4 62.4 1.0
CB B:ASP194 4.6 39.8 1.0
NZ B:LYS178 4.6 43.3 1.0
CE B:LYS178 4.6 39.0 1.0
CB B:SER197 4.7 36.6 1.0
O B:TYR220 4.8 34.6 1.0

Reference:

F.J.Sorrell, S.Knapp. Crystal Structure of Adaptor Protein 2 Associated Kinase 1 To Be Published.
Page generated: Sun Oct 27 10:04:54 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy