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Zinc in PDB 4rn7: The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630

Enzymatic activity of The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630

All present enzymatic activity of The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630:
3.5.1.28;

Protein crystallography data

The structure of The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630, PDB code: 4rn7 was solved by K.Tan, R.Mulligan, K.Kwon, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.75 / 1.72
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 66.407, 66.407, 96.200, 90.00, 90.00, 120.00
R / Rfree (%) 19.5 / 21.5

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630 (pdb code 4rn7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630, PDB code: 4rn7:

Zinc binding site 1 out of 1 in 4rn7

Go back to Zinc Binding Sites List in 4rn7
Zinc binding site 1 out of 1 in the The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:26.2
occ:0.77
 ND1 A:HIS195 2.1 27.9 1.0
NE2 A:HIS125 2.1 26.1 1.0
OE2 A:GLU141 2.1 29.3 1.0
CE1 A:HIS195 2.9 27.2 1.0
CD2 A:HIS125 3.0 31.5 1.0
CD A:GLU141 3.0 29.3 1.0
CG A:HIS195 3.2 24.0 1.0
OE1 A:GLU141 3.2 30.9 1.0
CE1 A:HIS125 3.2 37.6 1.0
CB A:HIS195 3.6 22.8 1.0
O A:LEU196 4.0 27.9 1.0
NE2 A:HIS195 4.1 25.2 1.0
CG A:HIS125 4.2 28.1 1.0
CD2 A:HIS195 4.2 25.1 1.0
ND1 A:HIS125 4.3 29.4 1.0
CG A:GLU141 4.4 29.8 1.0
CA A:HIS195 4.4 20.9 1.0
N A:LEU196 4.4 21.2 1.0
O A:HOH519 4.8 33.1 1.0
ND2 A:ASN145 4.8 26.9 1.0
OE1 A:GLU261 4.8 36.1 1.0
C A:HIS195 5.0 26.2 1.0
OE2 A:GLU261 5.0 45.4 1.0

Reference:

K.Tan, R.Mulligan, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Clostridium Difficile 630 To Be Published.
Page generated: Wed Dec 16 05:46:06 2020

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