Zinc in PDB 4r4x: Structure of Pngf-II in C2 Space Group

All present enzymatic activity of Structure of Pngf-II in C2 Space Group:
2.7.7.7;

The structure of Structure of Pngf-II in C2 Space Group, PDB code: 4r4x was solved by G.Sun, X.Yu, Celimuge, L.Wang, M.Li, J.Gan, D.Qu, J.Ma, L.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.97 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	161.400, 55.400, 71.200, 90.00, 102.20, 90.00
R / Rfree (%)	16.5 / 20.3

The binding sites of Zinc atom in the Structure of Pngf-II in C2 Space Group (pdb code 4r4x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Pngf-II in C2 Space Group, PDB code: 4r4x:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Pngf-II in C2 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Pngf-II in C2 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:23.5 occ:0.50 OD2 A:ASP159 2.1 31.2 1.0 OE1 A:GLU52 2.3 37.0 1.0 OE2 A:GLU52 2.5 35.6 1.0 CD A:GLU52 2.7 30.9 1.0 CG A:ASP159 3.2 27.6 1.0 OD1 A:ASP159 3.5 28.1 1.0 CG A:GLU52 4.1 27.0 1.0 CB A:ASP159 4.5 24.7 1.0 CE2 A:PHE163 4.5 26.5 1.0 CD2 A:LEU157 4.6 34.4 1.0 CB A:GLU52 4.7 22.3 1.0

Zinc binding site 2 out of 2 in the Structure of Pngf-II in C2 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Pngf-II in C2 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1002 b:27.6 occ:0.50 NE2 A:HIS542 2.1 27.2 0.5 NE2 A:HIS545 2.1 27.5 0.5 CE1 A:HIS542 2.6 27.7 0.5 CD2 A:HIS545 2.9 26.9 0.5 CE1 A:HIS545 3.3 27.4 0.5 CD2 A:HIS542 3.4 27.0 0.5 ND1 A:HIS542 3.9 27.1 0.5 CG A:HIS545 4.1 26.1 0.5 ND1 A:HIS545 4.3 27.5 0.5 CG A:HIS542 4.3 26.2 0.5 NE2 A:HIS543 4.5 23.9 0.5 CD2 A:HIS543 5.0 23.0 0.5

G.Sun, X.Yu, Celimuge, L.Wang, M.Li, J.Gan, D.Qu, J.Ma, L.Chen. Identification and Characterization of A Novel Prokaryotic Peptide: N-Glycosidase From Elizabethkingia Meningoseptica J.Biol.Chem. 2015.
ISSN: ESSN 1083-351X