Zinc in PDB 4r2j: Crystal Structure of Ydaa (Universal Stress Protein E) From Salmonella Typhimurium

The structure of Crystal Structure of Ydaa (Universal Stress Protein E) From Salmonella Typhimurium, PDB code: 4r2j was solved by M.Bangera, M.R.N.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.14 / 2.36
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	85.770, 85.770, 74.991, 90.00, 90.00, 120.00
R / Rfree (%)	21.2 / 26.2

The binding sites of Zinc atom in the Crystal Structure of Ydaa (Universal Stress Protein E) From Salmonella Typhimurium (pdb code 4r2j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Ydaa (Universal Stress Protein E) From Salmonella Typhimurium, PDB code: 4r2j:

Zinc binding site 1 out of 1 in the Crystal Structure of Ydaa (Universal Stress Protein E) From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ydaa (Universal Stress Protein E) From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:49.1 occ:1.00 ND1 A:HIS119 2.0 51.8 1.0 NE2 A:HIS117 2.2 49.7 1.0 O3 A:GLC404 2.4 72.8 1.0 O4 A:GLC404 2.4 50.9 1.0 CE1 A:HIS119 2.9 52.8 1.0 CG A:HIS119 3.0 55.0 1.0 CE1 A:HIS117 3.1 49.0 1.0 C4 A:GLC404 3.1 69.0 1.0 C3 A:GLC404 3.2 77.0 1.0 CD2 A:HIS117 3.3 44.8 1.0 CB A:HIS119 3.4 53.2 1.0 CA A:HIS119 3.7 55.8 1.0 NE2 A:HIS119 4.1 55.2 1.0 CD2 A:HIS119 4.1 54.6 1.0 ND1 A:HIS117 4.2 47.5 1.0 CG A:HIS117 4.4 45.8 1.0 C2 A:GLC404 4.5 86.6 1.0 O A:HIS119 4.6 61.0 1.0 C5 A:GLC404 4.6 74.2 1.0 C A:HIS119 4.7 61.4 1.0 N A:HIS119 4.7 52.1 1.0

M.Bangera, R.Panigrahi, S.R.Sagurthi, H.S.Savithri, M.R.N.Murthy. Structural and Functional Analysis of Two Universal Stress Proteins Ydaa and Ynaf From Salmonella Typhimurium: Possible Roles in Microbial Stress Tolerance J.Struct.Biol. 2015.
ISSN: ESSN 1095-8657
PubMed: 25600413
DOI: 10.1016/J.JSB.2015.01.003