Zinc in PDB 4r2i: The Crystal Structure of Stiv B204 Complexed with Amp-Pnp

The structure of The Crystal Structure of Stiv B204 Complexed with Amp-Pnp, PDB code: 4r2i was solved by N.Dellas, S.J.Nicolay, M.J.Young, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.08 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	52.360, 58.320, 67.320, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 23.6

The binding sites of Zinc atom in the The Crystal Structure of Stiv B204 Complexed with Amp-Pnp (pdb code 4r2i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of Stiv B204 Complexed with Amp-Pnp, PDB code: 4r2i:

Zinc binding site 1 out of 1 in the The Crystal Structure of Stiv B204 Complexed with Amp-Pnp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Stiv B204 Complexed with Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:28.1 occ:1.00 NE2 A:HIS108 2.0 25.9 1.0 NE2 A:HIS41 2.1 28.6 1.0 OD2 A:ASP73 2.2 29.9 1.0 OD2 A:ASP39 2.3 22.2 1.0 OD1 A:ASP39 2.4 22.9 1.0 CG A:ASP39 2.6 20.1 1.0 CE1 A:HIS108 2.9 30.4 1.0 CD2 A:HIS41 2.9 31.2 1.0 CE1 A:HIS41 3.1 32.2 1.0 CD2 A:HIS108 3.1 28.1 1.0 CG A:ASP73 3.1 32.6 1.0 CB A:ASP73 3.4 32.2 1.0 ND1 A:HIS108 4.0 27.3 1.0 CG A:HIS41 4.1 30.2 1.0 CB A:ASP39 4.1 19.6 1.0 ND1 A:HIS41 4.1 32.4 1.0 CE2 A:PHE80 4.1 35.1 1.0 CG A:HIS108 4.2 26.7 1.0 CD2 A:PHE80 4.2 33.5 1.0 OD1 A:ASP73 4.3 30.7 1.0 CA A:LYS76 4.9 36.9 1.0 CA A:ASP73 4.9 36.4 1.0 C A:ASP39 5.0 21.7 1.0 CA A:ASP39 5.0 18.1 1.0 CD2 A:LEU84 5.0 23.8 1.0

N.Dellas, J.C.Snyder, M.Dills, S.J.Nicolay, K.M.Kerchner, S.K.Brumfield, C.M.Lawrence, M.J.Young. Structure-Based Mutagenesis of Stiv B204 Reveals Essential Residues in the Virion-Associated Dna Packaging Atpase. J.Virol. 2015.
ISSN: ESSN 1098-5514
PubMed: 26699645
DOI: 10.1128/JVI.02435-15