Zinc in PDB 4r25: Structure of B. Subtilis Glnk

The structure of Structure of B. Subtilis Glnk, PDB code: 4r25 was solved by M.A.Schumacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.48 / 2.52
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	66.600, 66.600, 189.300, 90.00, 90.00, 120.00
R / Rfree (%)	21.3 / 25.5

The binding sites of Zinc atom in the Structure of B. Subtilis Glnk (pdb code 4r25). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Structure of B. Subtilis Glnk, PDB code: 4r25:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in the Structure of B. Subtilis Glnk


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of B. Subtilis Glnk within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:81.7 occ:1.00 ND1 A:HIS51 2.5 59.0 1.0 CE1 A:HIS51 3.1 46.8 1.0 CG A:HIS51 3.7 58.0 1.0 O A:LEU54 3.7 56.2 1.0 O A:TYR55 3.8 90.4 1.0 O A:GLY57 3.9 79.3 1.0 CB A:HIS51 4.2 43.4 1.0 O A:THR52 4.2 51.2 1.0 C A:TYR55 4.3 66.9 1.0 NE2 A:HIS51 4.3 70.2 1.0 CA A:TYR55 4.4 55.4 1.0 CA A:HIS51 4.5 46.5 1.0 N A:THR52 4.6 49.0 1.0 CD2 A:HIS51 4.6 41.4 1.0 C A:LEU54 4.7 47.0 1.0 N A:GLY57 4.9 84.3 1.0 C A:GLY57 4.9 79.5 1.0 N A:TYR55 5.0 48.2 1.0

Zinc binding site 2 out of 5 in the Structure of B. Subtilis Glnk


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of B. Subtilis Glnk within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.5 occ:1.00 NE2 A:HIS51 3.3 70.2 1.0 CE1 A:HIS51 3.8 46.8 1.0 CD2 A:HIS51 4.5 41.4 1.0

Zinc binding site 3 out of 5 in the Structure of B. Subtilis Glnk


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of B. Subtilis Glnk within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:74.7 occ:1.00 OE1 A:GLU61 2.6 83.4 1.0 OE2 A:GLU61 3.3 68.2 1.0 CD A:GLU61 3.3 96.4 1.0 CG A:GLU61 4.7 73.2 1.0

Zinc binding site 4 out of 5 in the Structure of B. Subtilis Glnk


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of B. Subtilis Glnk within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn204 b:0.9 occ:1.00 OE2 A:GLU71 2.3 73.0 1.0 NZ A:LYS12 2.5 73.5 1.0 O A:HOH301 2.6 39.9 0.3 OE2 A:GLU14 2.6 78.7 1.0 CD A:GLU71 3.5 69.5 1.0 CE A:LYS12 3.6 78.2 1.0 NZ A:LYS69 3.6 66.9 1.0 CD A:GLU14 3.7 62.5 1.0 CE A:LYS69 3.9 62.1 1.0 OE1 A:GLU71 4.2 72.8 1.0 OE1 A:GLU14 4.2 59.4 1.0 CD A:LYS12 4.5 54.2 1.0 CG A:GLU71 4.6 47.2 1.0 CG A:GLU14 4.8 39.8 1.0

Zinc binding site 5 out of 5 in the Structure of B. Subtilis Glnk


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of B. Subtilis Glnk within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn205 b:95.5 occ:1.00 NE2 A:HIS43 2.3 62.7 1.0 CE1 A:HIS43 3.0 53.9 1.0 CD2 A:HIS43 3.4 48.0 1.0 OE1 A:GLU66 3.9 81.0 1.0 ND1 A:HIS43 4.1 57.1 1.0 OE2 A:GLU66 4.1 59.9 1.0 CG A:HIS43 4.4 47.7 1.0 CD A:GLU66 4.4 60.1 1.0

M.A.Schumacher, N.B.Chinnam, B.Cuthbert, N.K.Tonthat, T.Whitfill. Structures of Regulatory Machinery Reveal Novel Molecular Mechanisms Controlling B. Subtilis Nitrogen Homeostasis. Genes Dev. V. 29 451 2015.
ISSN: ISSN 0890-9369
PubMed: 25691471
DOI: 10.1101/GAD.254714.114