Zinc in PDB 4ote: Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution

The structure of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution, PDB code: 4ote was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.11 / 2.20
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	120.508, 120.508, 120.508, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 24

The structure of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution (pdb code 4ote). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 22 binding sites of Zinc where determined in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution, PDB code: 4ote:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:22.4 occ:0.33 CL A:CL311 1.9 46.8 0.3 OD2 A:ASP247 2.0 35.7 1.0 CG A:ASP247 2.7 32.0 1.0 OD1 A:ASP247 2.9 30.3 1.0 O A:HOH437 3.8 48.7 1.0 O A:HOH491 4.0 40.2 1.0 CB A:ASP247 4.1 30.5 1.0 NH1 A:ARG250 4.9 45.7 1.0

Zinc binding site 2 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:27.2 occ:0.57 ZN A:ZN303 0.0 27.2 0.6 ZN A:ZN303 1.0 37.9 0.4 OE2 A:GLU123 1.8 50.1 1.0 O A:ACT318 2.0 41.9 1.0 CD A:GLU123 2.6 49.5 1.0 O A:HOH414 2.7 39.1 1.0 OE1 A:GLU123 2.8 48.5 1.0 C A:ACT318 3.0 44.5 1.0 OXT A:ACT318 3.4 55.0 1.0 CG A:GLU123 4.0 48.9 1.0 CH3 A:ACT318 4.3 46.3 1.0 CB A:LYS119 4.6 53.6 1.0 N A:LYS119 4.6 47.9 1.0 CG A:LYS119 4.7 59.4 1.0

Zinc binding site 3 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:37.9 occ:0.43 ZN A:ZN303 0.0 37.9 0.4 ZN A:ZN303 1.0 27.2 0.6 O A:HOH414 1.8 39.1 1.0 O A:ACT318 2.3 41.9 1.0 OE2 A:GLU123 2.6 50.1 1.0 C A:ACT318 3.1 44.5 1.0 OE1 A:GLU123 3.1 48.5 1.0 OXT A:ACT318 3.1 55.0 1.0 CD A:GLU123 3.2 49.5 1.0 CG A:LYS119 4.1 59.4 1.0 CB A:LYS119 4.3 53.6 1.0 N A:LYS119 4.3 47.9 1.0 CH3 A:ACT318 4.5 46.3 1.0 CG A:GLU123 4.7 48.9 1.0 CA A:LYS119 5.0 49.1 1.0 CD A:LYS119 5.0 65.1 1.0

Zinc binding site 4 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn304 b:24.9 occ:1.00 OD2 A:ASP65 1.9 29.8 1.0 OE2 B:GLU77 1.9 35.1 1.0 OD1 A:ASP64 2.0 33.7 1.0 O A:ACT316 2.0 31.7 1.0 CD B:GLU77 2.7 35.4 1.0 C A:ACT316 2.8 38.0 1.0 OXT A:ACT316 2.9 39.4 1.0 OE1 B:GLU77 2.9 35.3 1.0 CG A:ASP64 3.0 34.5 1.0 CG A:ASP65 3.0 30.3 1.0 OD2 A:ASP64 3.5 36.7 1.0 CB A:ASP65 3.6 30.1 1.0 CD1 A:LEU68 3.8 34.1 1.0 CE B:LYS61 3.8 46.8 1.0 O B:HOH448 3.9 52.6 1.0 N A:ASP65 4.0 29.3 1.0 NZ B:LYS61 4.1 51.1 1.0 OD1 A:ASP65 4.1 30.5 1.0 CG B:GLU77 4.1 35.4 1.0 N A:ASP64 4.2 31.9 1.0 C A:ASP64 4.2 30.9 1.0 CH3 A:ACT316 4.2 37.0 1.0 CB A:ASP64 4.3 32.5 1.0 O B:HOH427 4.3 37.0 1.0 CA A:ASP64 4.4 31.0 1.0 CA A:ASP65 4.5 28.6 1.0 CG A:LEU68 4.6 32.5 1.0 O A:ASP64 4.8 32.2 1.0

Zinc binding site 5 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn305 b:30.6 occ:1.00 OE2 A:GLU46 2.0 37.6 1.0 OE2 A:GLU42 2.1 31.2 1.0 O A:ACT315 2.5 44.4 1.0 CD A:GLU42 2.8 32.2 1.0 OE1 A:GLU42 2.8 34.1 1.0 OXT A:ACT315 2.9 39.4 1.0 CD A:GLU46 3.0 34.9 1.0 C A:ACT315 3.1 38.4 1.0 CG A:GLU46 3.5 30.8 1.0 NZ A:LYS256 4.0 54.5 1.0 OE1 A:GLU46 4.1 39.5 1.0 CG A:GLU42 4.3 30.3 1.0 CH3 A:ACT315 4.6 37.4 1.0 O A:GLU42 4.7 26.7 1.0 CE A:LYS256 4.9 51.0 1.0 CB A:GLU46 4.9 29.0 1.0 CB A:GLU45 4.9 30.9 1.0

Zinc binding site 6 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn306 b:14.7 occ:0.60 ZN A:ZN306 0.0 14.7 0.6 CL A:CL313 2.0 33.5 1.0 OE2 A:GLU45 2.0 32.2 1.0 CD A:GLU45 2.8 34.1 1.0 OE1 A:GLU45 2.9 36.6 1.0 ZN A:ZN306 3.3 11.3 0.3 NZ A:LYS48 3.5 47.3 1.0 CE A:LYS48 4.1 45.8 1.0 CG A:GLU45 4.2 33.3 1.0 CB A:VAL60 4.6 28.0 1.0 O A:VAL60 4.7 30.2 1.0 N A:VAL60 4.8 29.3 1.0 CG2 A:VAL60 4.9 28.0 1.0

Zinc binding site 7 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn306 b:11.3 occ:0.30 ZN A:ZN306 0.0 11.3 0.3 ZN A:ZN306 2.8 4.0 0.1 ZN A:ZN306 3.3 14.7 0.6 O A:HOH416 4.0 36.2 1.0 O A:VAL60 4.0 30.2 1.0 CL A:CL313 4.2 33.5 1.0 OE2 A:GLU45 4.6 32.2 1.0

Zinc binding site 8 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn306 b:4.0 occ:0.10 ZN A:ZN306 0.0 4.0 0.1 O A:HOH416 1.8 36.2 1.0 ZN A:ZN306 2.8 11.3 0.3 CB A:ASN62 3.9 35.2 1.0 O A:VAL60 4.0 30.2 1.0 N A:ASN62 4.3 29.7 1.0 CA A:ASN62 4.8 31.1 1.0

Zinc binding site 9 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn307 b:74.2 occ:0.90 OE2 A:GLU53 2.2 50.8 1.0 O A:HOH470 2.2 47.0 1.0 OE1 A:GLU53 2.4 47.0 1.0 O A:HOH472 2.4 42.0 1.0 CD A:GLU53 2.6 46.4 1.0 O A:HOH471 2.9 60.0 1.0 CD1 A:LEU50 4.1 38.0 1.0 CG A:GLU53 4.1 42.3 1.0 O A:HOH469 4.6 43.8 1.0 CB A:GLU53 5.0 38.6 1.0

Zinc binding site 10 out of 22 in the Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of A Putative Lipoprotein (CD630_1653) From Clostridium Difficile 630 at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn308 b:44.2 occ:0.50 ZN A:ZN308 0.0 44.2 0.5 OE2 A:GLU230 2.4 60.6 1.0 ZN A:ZN310 3.0 48.7 0.5 ZN A:ZN308 3.0 59.2 0.5 CD A:GLU230 3.5 56.8 1.0 OE1 A:GLU230 3.9 60.2 1.0 NH2 A:ARG228 4.0 34.2 1.0 NE A:ARG228 4.0 33.5 1.0 CL A:CL314 4.3 90.2 1.0 CZ A:ARG228 4.3 33.1 1.0 CG A:GLU230 4.8 52.1 1.0 O A:HOH417 4.8 47.6 1.0 OD2 A:ASP231 4.9 40.5 1.0 OD1 A:ASP231 4.9 41.8 1.0 CD A:ARG228 5.0 33.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.