Zinc in PDB 4mn6: Crystal Structure of Truncated Pas Domain From S. Aureus Yycg

All present enzymatic activity of Crystal Structure of Truncated Pas Domain From S. Aureus Yycg:
2.7.13.3;

The structure of Crystal Structure of Truncated Pas Domain From S. Aureus Yycg, PDB code: 4mn6 was solved by N.Shaikh, R.Hvorup, B.Winnen, B.M.Collins, G.F.King, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.82 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.650, 61.150, 95.640, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / 27.8

The binding sites of Zinc atom in the Crystal Structure of Truncated Pas Domain From S. Aureus Yycg (pdb code 4mn6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Truncated Pas Domain From S. Aureus Yycg, PDB code: 4mn6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Truncated Pas Domain From S. Aureus Yycg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Truncated Pas Domain From S. Aureus Yycg within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:49.5 occ:1.00 ND1 A:HIS364 1.9 46.1 1.0 OE2 A:GLU368 2.0 86.2 1.0 ND1 A:HIS271 2.1 61.0 1.0 OD1 A:ASP274 2.2 49.6 1.0 OE1 A:GLU368 2.4 69.6 1.0 CD A:GLU368 2.5 61.4 1.0 CE1 A:HIS364 2.5 52.0 1.0 OD2 A:ASP274 2.6 43.3 1.0 CG A:ASP274 2.7 46.3 1.0 CE1 A:HIS271 2.8 52.0 1.0 CG A:HIS364 3.0 55.5 1.0 CG A:HIS271 3.3 66.0 1.0 CB A:HIS364 3.6 50.8 1.0 NE2 A:HIS364 3.7 44.3 1.0 CB A:HIS271 3.8 52.1 1.0 O A:HOH517 3.9 55.7 1.0 O A:HOH516 3.9 55.6 1.0 CD2 A:HIS364 3.9 42.0 1.0 CG A:GLU368 3.9 76.7 1.0 NE2 A:HIS271 4.0 58.6 1.0 CA A:HIS364 4.1 42.2 1.0 CB A:ASP274 4.2 37.1 1.0 N A:HIS271 4.2 52.4 1.0 CD2 A:HIS271 4.2 66.8 1.0 CA A:HIS271 4.6 46.6 1.0 O A:ILE269 4.8 82.4 1.0 CA A:ASP274 4.8 50.6 1.0 CB A:GLU368 4.8 45.5 1.0 N A:ASP274 5.0 48.1 1.0 O A:HOH515 5.0 55.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Truncated Pas Domain From S. Aureus Yycg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Truncated Pas Domain From S. Aureus Yycg within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:51.0 occ:1.00 ND1 B:HIS364 1.9 45.4 1.0 ND1 B:HIS271 2.0 56.9 1.0 OD1 B:ASP274 2.0 59.0 1.0 OE1 B:GLU368 2.3 64.5 1.0 OE2 B:GLU368 2.3 79.1 1.0 CD B:GLU368 2.7 64.3 1.0 CG B:ASP274 2.7 48.5 1.0 OD2 B:ASP274 2.7 52.7 1.0 CE1 B:HIS271 2.8 54.4 1.0 CE1 B:HIS364 2.9 47.3 1.0 CG B:HIS364 2.9 40.7 1.0 CG B:HIS271 3.1 55.2 1.0 CB B:HIS364 3.3 41.8 1.0 CB B:HIS271 3.6 63.6 1.0 CA B:HIS364 3.9 50.9 1.0 NE2 B:HIS271 4.0 69.4 1.0 N B:HIS271 4.0 71.6 1.0 NE2 B:HIS364 4.0 45.7 1.0 CD2 B:HIS364 4.1 39.8 1.0 CD2 B:HIS271 4.2 67.1 1.0 CG B:GLU368 4.2 74.2 1.0 O B:HOH501 4.2 48.9 1.0 CB B:ASP274 4.2 53.5 1.0 CA B:HIS271 4.4 75.7 1.0 N B:HIS364 4.8 46.9 1.0 CA B:ASP274 4.9 61.1 1.0 C B:THR270 4.9 68.4 1.0 C B:HIS364 4.9 55.4 1.0 NH2 B:ARG343 4.9 68.0 1.0 CB B:GLU368 5.0 56.9 1.0

N.Shaikh, R.Hvorup, B.Winnen, B.M.Collins, G.F.King. Crystal Structure of Pas Domain of S. Aureus Yycg To Be Published.