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Zinc in PDB 4mn5: Crystal Structure of Pas Domain of S. Aureus Yycg

Enzymatic activity of Crystal Structure of Pas Domain of S. Aureus Yycg

All present enzymatic activity of Crystal Structure of Pas Domain of S. Aureus Yycg:
2.7.13.3;

Protein crystallography data

The structure of Crystal Structure of Pas Domain of S. Aureus Yycg, PDB code: 4mn5 was solved by N.Shaikh, R.Hvorup, B.Winnen, B.M.Collins, G.F.King, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.64 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.820, 60.510, 84.500, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 25.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Pas Domain of S. Aureus Yycg (pdb code 4mn5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Pas Domain of S. Aureus Yycg, PDB code: 4mn5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4mn5

Go back to Zinc Binding Sites List in 4mn5
Zinc binding site 1 out of 2 in the Crystal Structure of Pas Domain of S. Aureus Yycg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Pas Domain of S. Aureus Yycg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:44.7
occ:1.00
OD1 A:ASP274 2.2 49.0 1.0
ND1 A:HIS364 2.2 46.4 1.0
ND1 A:HIS271 2.3 49.9 1.0
OE1 A:GLU368 2.4 55.2 1.0
OE2 A:GLU368 2.6 57.5 1.0
OD2 A:ASP274 2.6 44.6 1.0
CG A:ASP274 2.7 47.4 1.0
CD A:GLU368 2.8 55.9 1.0
CG A:HIS364 3.2 45.0 1.0
CE1 A:HIS271 3.2 50.2 1.0
CE1 A:HIS364 3.2 46.8 1.0
CG A:HIS271 3.3 51.4 1.0
CB A:HIS364 3.4 40.9 1.0
CB A:HIS271 3.6 51.6 1.0
CA A:HIS364 3.8 44.9 1.0
O A:HOH511 4.0 45.3 1.0
CB A:ASP274 4.2 43.4 1.0
CG A:GLU368 4.2 56.0 1.0
CD2 A:HIS364 4.3 45.1 1.0
NE2 A:HIS364 4.3 48.4 1.0
NE2 A:HIS271 4.3 51.7 1.0
N A:HIS271 4.3 50.2 1.0
CD2 A:HIS271 4.4 53.4 1.0
CA A:HIS271 4.6 51.5 1.0
N A:HIS364 4.8 39.0 1.0
CA A:ASP274 4.8 44.8 1.0
O A:LEU363 4.8 42.8 1.0
C A:HIS364 4.9 42.2 1.0

Zinc binding site 2 out of 2 in 4mn5

Go back to Zinc Binding Sites List in 4mn5
Zinc binding site 2 out of 2 in the Crystal Structure of Pas Domain of S. Aureus Yycg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Pas Domain of S. Aureus Yycg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:37.3
occ:1.00
OD1 B:ASP274 2.2 35.9 1.0
ND1 B:HIS364 2.2 36.8 1.0
ND1 B:HIS271 2.2 39.0 1.0
OE1 B:GLU368 2.2 38.6 1.0
OD2 B:ASP274 2.7 37.5 1.0
CG B:ASP274 2.7 37.0 1.0
OE2 B:GLU368 2.7 40.9 1.0
CD B:GLU368 2.8 44.1 1.0
CE1 B:HIS364 3.2 34.7 1.0
CG B:HIS271 3.2 41.2 1.0
CE1 B:HIS271 3.2 39.8 1.0
CG B:HIS364 3.2 38.8 1.0
CB B:HIS271 3.5 39.6 1.0
CB B:HIS364 3.5 36.2 1.0
CA B:HIS364 4.0 34.6 1.0
O B:HOH518 4.0 39.8 1.0
N B:HIS271 4.2 41.3 1.0
CB B:ASP274 4.2 36.4 1.0
NE2 B:HIS364 4.3 35.5 1.0
NE2 B:HIS271 4.3 42.2 1.0
CG B:GLU368 4.3 39.3 1.0
CD2 B:HIS271 4.3 39.5 1.0
CD2 B:HIS364 4.3 36.5 1.0
CA B:HIS271 4.4 41.8 1.0
NH2 B:ARG343 4.6 47.8 1.0
CA B:ASP274 4.8 39.9 1.0
N B:HIS364 4.9 35.6 1.0
C B:THR270 5.0 39.0 1.0

Reference:

N.Shaikh, R.Hvorup, B.Winnen, B.M.Collins, G.F.King. Crystal Structure of Pas Domain of S. Aureus Yycg To Be Published.
Page generated: Wed Dec 16 05:35:36 2020

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