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Zinc in PDB 4m0c: The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn.

Protein crystallography data

The structure of The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn., PDB code: 4m0c was solved by K.Tan, M.Gu, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.73 / 2.07
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.483, 88.709, 98.040, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 22.4

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn. (pdb code 4m0c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn., PDB code: 4m0c:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 4m0c

Go back to Zinc Binding Sites List in 4m0c
Zinc binding site 1 out of 3 in the The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:35.2
occ:0.76
ND1 A:HIS26 2.1 31.9 1.0
OE2 A:GLU29 2.2 47.9 1.0
CE1 A:HIS26 3.0 35.9 1.0
CD A:GLU29 3.0 50.3 1.0
CG A:HIS26 3.1 30.5 1.0
OE1 A:GLU29 3.2 53.0 1.0
CB A:HIS26 3.5 30.4 1.0
CA A:HIS26 3.8 34.0 1.0
NE2 A:HIS26 4.1 36.7 1.0
CD2 A:HIS26 4.2 30.8 1.0
CG A:GLU29 4.4 47.5 1.0
N A:HIS26 4.7 32.9 1.0
CB A:GLU29 4.8 42.7 1.0
C A:HIS26 4.9 32.7 1.0
O A:HIS26 4.9 31.5 1.0

Zinc binding site 2 out of 3 in 4m0c

Go back to Zinc Binding Sites List in 4m0c
Zinc binding site 2 out of 3 in the The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn302

b:64.7
occ:0.88
OD2 B:ASP191 2.0 67.7 1.0
O B:HOH448 2.2 27.6 1.0
CG B:ASP191 2.9 62.5 1.0
OD1 B:ASP191 3.2 63.6 1.0
OG1 B:THR193 4.2 56.9 1.0
CB B:ASP191 4.2 57.1 1.0
CD B:PRO192 4.4 52.8 1.0
CB B:THR193 4.7 53.3 1.0
N B:THR193 5.0 39.8 1.0

Zinc binding site 3 out of 3 in 4m0c

Go back to Zinc Binding Sites List in 4m0c
Zinc binding site 3 out of 3 in the The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn303

b:59.6
occ:0.64
OD2 B:ASP48 2.1 47.5 1.0
O B:HOH449 2.4 54.1 1.0
CG B:ASP48 3.1 38.8 1.0
OD1 B:ASP48 3.5 39.0 1.0
O B:HOH404 3.9 32.3 1.0
O A:HOH440 4.3 54.6 1.0
CB B:ASP48 4.3 34.9 1.0

Reference:

K.Tan, M.Gu, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of A Fmn-Dependent Nadh-Azoreductase From Bacillus Anthracis Str. Ames Ancestor in Complex with Fmn. To Be Published.
Page generated: Sun Oct 27 02:12:47 2024

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