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Zinc in PDB 4jh8: Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex

Protein crystallography data

The structure of Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex, PDB code: 4jh8 was solved by M.K.Thompson, J.Harp, M.E.Keithly, K.Jagessar, P.D.Cook, R.N.Armstrong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.92 / 1.41
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.310, 68.535, 69.854, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 17.4

Other elements in 4jh8:

The structure of Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex (pdb code 4jh8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex, PDB code: 4jh8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4jh8

Go back to Zinc Binding Sites List in 4jh8
Zinc binding site 1 out of 2 in the Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:13.3
occ:1.00
O1P A:FCN204 1.9 16.9 1.0
NE2 B:HIS7 2.0 12.2 1.0
NE2 A:HIS66 2.0 11.7 1.0
OE1 A:GLU115 2.0 13.6 1.0
O A:FCN204 2.6 21.0 1.0
CE1 B:HIS7 3.0 12.6 1.0
CE1 A:HIS66 3.0 13.2 1.0
CD2 A:HIS66 3.1 10.8 1.0
CD A:GLU115 3.1 12.3 1.0
CD2 B:HIS7 3.1 11.9 1.0
P A:FCN204 3.2 18.2 1.0
C1 A:FCN204 3.2 30.0 1.0
OE2 A:GLU115 3.4 14.5 1.0
C2 A:FCN204 3.7 24.7 1.0
C3 A:FCN204 3.8 21.2 1.0
OH A:TYR105 4.0 16.9 1.0
O A:HOH334 4.0 17.4 1.0
O3P A:FCN204 4.1 20.5 1.0
CE2 A:TYR105 4.1 15.7 1.0
ND1 B:HIS7 4.1 11.6 1.0
ND1 A:HIS66 4.2 12.6 1.0
CG B:HIS7 4.2 11.6 1.0
CG A:HIS66 4.2 9.8 1.0
O2P A:FCN204 4.4 19.6 1.0
CG A:GLU115 4.4 13.1 1.0
CB A:ALA68 4.5 12.3 1.0
CZ A:TYR105 4.5 14.8 1.0
CB A:GLU115 4.6 12.8 1.0
CB B:CYS9 4.7 12.4 1.0

Zinc binding site 2 out of 2 in 4jh8

Go back to Zinc Binding Sites List in 4jh8
Zinc binding site 2 out of 2 in the Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Fosb From Bacillus Cereus with Zinc and L- Cysteine-Fosfomycin Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:10.5
occ:1.00
O2P B:FCN203 1.9 11.9 1.0
NE2 B:HIS66 2.0 9.0 1.0
OE1 B:GLU115 2.0 9.9 1.0
NE2 A:HIS7 2.1 9.3 1.0
O B:FCN203 2.6 22.8 1.0
CE1 A:HIS7 3.0 10.4 1.0
CE1 B:HIS66 3.0 10.8 1.0
CD2 B:HIS66 3.0 9.4 1.0
CD B:GLU115 3.1 9.7 1.0
CD2 A:HIS7 3.1 9.0 1.0
P B:FCN203 3.2 13.9 1.0
C1 B:FCN203 3.2 21.8 1.0
OE2 B:GLU115 3.4 11.5 1.0
C2 B:FCN203 3.7 20.4 1.0
C3 B:FCN203 3.8 21.6 1.0
OH B:TYR105 4.0 13.5 1.0
O B:HOH314 4.0 11.9 1.0
O1P B:FCN203 4.0 15.9 1.0
CE2 B:TYR105 4.1 11.8 1.0
ND1 B:HIS66 4.1 10.7 1.0
ND1 A:HIS7 4.2 9.7 1.0
CG B:HIS66 4.2 8.6 1.0
CG A:HIS7 4.2 8.8 1.0
O3P B:FCN203 4.3 15.5 1.0
CG B:GLU115 4.3 9.8 1.0
CB B:ALA68 4.4 9.7 1.0
CZ B:TYR105 4.5 11.4 1.0
CB B:GLU115 4.6 8.8 1.0
CB A:CYS9 4.7 13.1 1.0
OH B:TYR64 5.0 15.7 1.0

Reference:

M.K.Thompson, M.E.Keithly, J.Harp, P.D.Cook, K.L.Jagessar, G.A.Sulikowski, R.N.Armstrong. Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred By Fosb From Bacillus Cereus. Biochemistry V. 52 7350 2013.
ISSN: ISSN 0006-2960
PubMed: 24004181
DOI: 10.1021/BI4009648
Page generated: Wed Dec 16 05:25:26 2020

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