Zinc in PDB 4jcv: Crystal Structure of the Recor Complex in An Open Conformation

The structure of Crystal Structure of the Recor Complex in An Open Conformation, PDB code: 4jcv was solved by J.Radzimanowski, S.Mcsweeney, J.Timmins, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	83.07 / 3.34
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	63.130, 93.110, 92.350, 103.60, 110.42, 106.22
R / Rfree (%)	24 / 27.8

The binding sites of Zinc atom in the Crystal Structure of the Recor Complex in An Open Conformation (pdb code 4jcv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of the Recor Complex in An Open Conformation, PDB code: 4jcv:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Crystal Structure of the Recor Complex in An Open Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Recor Complex in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:73.2 occ:1.00 SG A:CYS57 2.1 73.4 1.0 SG A:CYS69 2.4 74.3 1.0 SG A:CYS72 2.4 81.2 1.0 SG A:CYS60 2.5 80.7 1.0 O A:CYS60 2.9 97.5 1.0 CB A:CYS57 3.0 74.1 1.0 CB A:CYS69 3.2 77.4 1.0 N A:CYS60 3.4 82.0 1.0 CB A:CYS72 3.5 89.0 1.0 N A:CYS69 3.7 85.2 1.0 C A:CYS60 3.7 84.1 1.0 CB A:CYS60 3.8 80.3 1.0 CA A:CYS60 3.8 79.5 1.0 CA A:CYS69 4.1 83.2 1.0 CB A:ILE59 4.1 82.5 1.0 CA A:CYS57 4.4 73.2 1.0 C A:ILE59 4.5 81.0 1.0 N A:ILE59 4.5 79.7 1.0 N A:CYS72 4.6 91.8 1.0 CA A:ILE59 4.6 79.6 1.0 C A:CYS57 4.6 74.2 1.0 CA A:CYS72 4.6 93.1 1.0 CG1 A:ILE59 4.6 82.7 1.0 CB A:ASN62 4.7 74.0 1.0 N A:ASN62 4.8 75.2 1.0 O A:CYS69 4.8 97.4 1.0 O A:CYS57 4.9 74.2 1.0 C A:LYS68 4.9 88.3 1.0 C A:CYS69 4.9 90.9 1.0

Zinc binding site 2 out of 6 in the Crystal Structure of the Recor Complex in An Open Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Recor Complex in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:70.6 occ:1.00 SG B:CYS57 2.3 68.1 1.0 SG B:CYS69 2.5 81.6 1.0 SG B:CYS60 2.6 80.5 1.0 O B:CYS60 2.9 97.1 1.0 CB B:CYS57 3.1 69.3 1.0 CB B:CYS69 3.2 82.0 1.0 N B:CYS60 3.3 81.4 1.0 SG B:CYS72 3.3 0.2 1.0 CB B:CYS72 3.6 0.5 1.0 C B:CYS60 3.7 83.7 1.0 CB B:CYS60 3.8 80.1 1.0 CA B:CYS60 3.8 79.2 1.0 N B:CYS69 3.9 85.8 1.0 CB B:ILE59 4.0 81.4 1.0 CA B:CYS69 4.1 85.9 1.0 C B:ILE59 4.4 80.2 1.0 N B:ILE59 4.4 78.4 1.0 CA B:CYS57 4.5 70.0 1.0 CA B:ILE59 4.5 78.5 1.0 CG1 B:ILE59 4.5 81.2 1.0 N B:CYS72 4.7 99.5 1.0 C B:CYS57 4.7 72.7 1.0 O B:CYS69 4.7 94.7 1.0 CA B:CYS72 4.8 0.6 1.0 N B:ASN62 4.8 74.9 1.0 C B:CYS69 4.9 90.4 1.0 CG2 B:ILE59 5.0 83.9 1.0

Zinc binding site 3 out of 6 in the Crystal Structure of the Recor Complex in An Open Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Recor Complex in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn301 b:0.8 occ:1.00 SG C:CYS69 2.5 0.7 1.0 SG C:CYS57 2.6 0.1 1.0 SG C:CYS72 2.6 0.4 1.0 O C:CYS60 3.1 0.6 1.0 SG C:CYS60 3.4 0.7 1.0 N C:CYS60 3.6 0.4 1.0 CB C:CYS72 3.7 0.4 1.0 CB C:CYS57 3.7 0.4 1.0 CB C:CYS69 3.8 0.9 1.0 CB C:ILE59 3.9 0.4 1.0 N C:CYS69 3.9 0.8 1.0 C C:CYS60 4.0 0.2 1.0 CG1 C:ILE59 4.1 0.6 1.0 CA C:CYS60 4.2 0.8 1.0 CB C:CYS60 4.4 0.8 1.0 CA C:CYS69 4.5 0.8 1.0 CG1 C:VAL71 4.6 0.8 1.0 C C:ILE59 4.6 0.3 1.0 CA C:ILE59 4.7 0.1 1.0 N C:ILE59 4.7 0.1 1.0 CG2 C:ILE59 4.8 0.2 1.0 CG C:LYS68 4.9 0.9 1.0 CA C:CYS72 4.9 0.1 1.0 C C:LYS68 4.9 0.2 1.0 CA C:LYS68 4.9 0.1 1.0 N C:CYS72 4.9 0.5 1.0 CA C:CYS57 5.0 0.3 1.0

Zinc binding site 4 out of 6 in the Crystal Structure of the Recor Complex in An Open Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Recor Complex in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn301 b:0.2 occ:1.00 O D:CYS60 2.5 0.3 1.0 SG D:CYS69 2.5 0.8 1.0 SG D:CYS72 2.7 0.1 1.0 SG D:CYS57 2.9 0.9 1.0 SG D:CYS60 3.0 0.1 1.0 N D:CYS60 3.1 0.2 1.0 C D:CYS60 3.4 0.5 1.0 CA D:CYS60 3.6 0.7 1.0 CB D:CYS57 3.8 0.9 1.0 CB D:CYS60 3.9 0.2 1.0 CB D:ILE59 3.9 0.8 1.0 CB D:CYS69 4.0 0.0 1.0 CB D:CYS72 4.0 0.1 1.0 C D:ILE59 4.2 0.9 1.0 N D:CYS69 4.4 0.6 1.0 CA D:ILE59 4.4 0.2 1.0 CG1 D:VAL71 4.5 0.3 1.0 N D:ILE59 4.5 0.7 1.0 CG1 D:ILE59 4.7 0.2 1.0 N D:PHE61 4.7 0.2 1.0 CG2 D:ILE59 4.8 0.3 1.0 CA D:CYS69 4.8 0.8 1.0 N D:ASN62 4.9 0.1 1.0

Zinc binding site 5 out of 6 in the Crystal Structure of the Recor Complex in An Open Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of the Recor Complex in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn301 b:83.3 occ:1.00 SG E:CYS173 2.6 0.7 1.0 SG E:CYS156 2.6 0.8 1.0 SG E:CYS153 2.7 0.8 1.0 CB E:CYS176 2.8 0.1 1.0 SG E:CYS176 2.8 0.8 1.0 CB E:CYS156 3.2 0.5 1.0 N E:CYS156 3.6 0.6 1.0 CB E:CYS173 3.6 0.8 1.0 CB E:CYS153 3.9 0.6 1.0 N E:CYS173 3.9 0.5 1.0 CA E:CYS176 4.0 0.6 1.0 CA E:CYS156 4.0 0.8 1.0 N E:CYS176 4.1 0.9 1.0 CB E:ARG155 4.3 0.3 1.0 CA E:CYS173 4.3 0.4 1.0 C E:ARG155 4.7 0.1 1.0 O E:CYS173 4.7 0.1 1.0 CD E:ARG155 4.8 0.7 1.0 C E:CYS156 4.8 0.2 1.0 N E:GLY157 4.9 0.5 1.0 CG E:ARG155 4.9 0.0 1.0 CA E:ARG155 4.9 0.5 1.0 C E:CYS176 4.9 0.9 1.0 C E:CYS173 4.9 0.5 1.0 CB E:ALA158 5.0 0.0 1.0 N E:ARG155 5.0 0.1 1.0

Zinc binding site 6 out of 6 in the Crystal Structure of the Recor Complex in An Open Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of the Recor Complex in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn301 b:87.0 occ:1.00 SG F:CYS173 2.3 0.3 1.0 SG F:CYS156 2.4 0.2 1.0 SG F:CYS153 2.7 0.8 1.0 CB F:CYS176 2.8 0.0 1.0 SG F:CYS176 2.9 0.8 1.0 CB F:CYS156 3.2 0.0 1.0 CB F:CYS173 3.5 0.9 1.0 CB F:CYS153 3.8 0.1 1.0 N F:CYS156 3.8 0.1 1.0 N F:CYS173 4.0 0.4 1.0 CA F:CYS176 4.0 0.4 1.0 N F:CYS176 4.0 0.4 1.0 CA F:CYS156 4.1 0.6 1.0 CA F:CYS173 4.3 0.8 1.0 CB F:ARG155 4.6 0.4 1.0 CB F:ALA158 4.7 0.1 1.0 O F:CYS173 4.7 0.7 1.0 C F:LYS175 4.7 0.7 1.0 C F:CYS173 4.8 0.6 1.0 C F:CYS156 4.8 0.1 1.0 N F:GLY157 4.8 0.7 1.0 C F:ARG155 4.9 0.5 1.0 O F:CYS176 4.9 0.3 1.0 C F:CYS176 4.9 0.7 1.0

J.Radzimanowski, F.Dehez, A.Round, A.Bidon-Chanal, S.Mcsweeney, J.Timmins. An 'Open' Structure of the Recor Complex Supports Ssdna Binding Within the Core of the Complex. Nucleic Acids Res. V. 41 7972 2013.
ISSN: ISSN 0305-1048
PubMed: 23814185
DOI: 10.1093/NAR/GKT572