Zinc in PDB 4hcg: Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis

The structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis, PDB code: 4hcg was solved by Y.Kim, N.Maltseva, S.Shatsman, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.29 / 1.85
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	52.500, 52.500, 172.007, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 19.2

The binding sites of Zinc atom in the Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis (pdb code 4hcg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis, PDB code: 4hcg:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in the Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:21.2 occ:1.00 ND1 A:HIS116 2.0 20.1 1.0 ND1 A:HIS78 2.1 19.9 1.0 SG A:CYS113 2.3 19.9 1.0 SE A:MSE121 2.5 26.0 0.7 CE1 A:HIS116 2.9 18.4 1.0 CE1 A:HIS78 3.0 20.2 1.0 CG A:HIS116 3.1 21.0 1.0 CB A:CYS113 3.1 18.8 1.0 CG A:HIS78 3.1 22.2 1.0 CE A:MSE121 3.4 31.4 1.0 CB A:HIS116 3.5 18.0 1.0 CB A:HIS78 3.5 21.9 1.0 CA A:HIS78 3.9 21.6 1.0 CG A:MSE121 4.0 25.3 1.0 NE2 A:HIS116 4.1 19.9 1.0 CD2 A:HIS116 4.2 19.8 1.0 NE2 A:HIS78 4.2 21.6 1.0 CD2 A:HIS78 4.2 20.8 1.0 O A:GLU77 4.3 21.1 1.0 N A:HIS116 4.4 19.1 1.0 CB A:MSE121 4.5 22.2 1.0 N A:THR79 4.5 19.4 1.0 CA A:HIS116 4.6 19.3 1.0 CA A:CYS113 4.6 17.1 1.0 CB A:TYR115 4.6 20.5 1.0 OD2 A:ASP51 4.7 25.2 1.0 C A:HIS78 4.8 23.4 1.0 CD2 A:TYR115 4.8 21.4 1.0 N A:HIS78 5.0 20.1 1.0 CB A:ASP51 5.0 29.4 1.0

Zinc binding site 2 out of 5 in the Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:25.8 occ:1.00 NE2 B:HIS116 2.0 23.3 1.0 NE2 A:HIS116 2.0 19.9 1.0 O B:HOH324 2.0 19.4 1.0 O A:HOH331 2.0 22.6 1.0 CD2 B:HIS116 2.9 18.6 1.0 CD2 A:HIS116 2.9 19.8 1.0 CE1 B:HIS116 3.0 20.6 1.0 CE1 A:HIS116 3.0 18.4 1.0 OG B:SER76 3.9 30.4 1.0 OD1 B:ASP51 3.9 23.8 1.0 O A:HOH357 3.9 50.9 1.0 OG A:SER76 3.9 32.6 1.0 OD2 A:ASP51 3.9 25.2 1.0 CG B:HIS116 4.0 20.0 1.0 ND1 B:HIS116 4.0 21.4 1.0 CG A:HIS116 4.0 21.0 1.0 ND1 A:HIS116 4.0 20.1 1.0 CB A:SER76 4.2 24.1 1.0 CB B:SER76 4.3 22.2 1.0 OD2 B:ASP51 4.3 28.4 1.0 OD1 A:ASP51 4.4 31.9 1.0 CG B:ASP51 4.4 26.1 1.0 CG A:ASP51 4.4 30.2 1.0

Zinc binding site 3 out of 5 in the Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:22.8 occ:1.00 OE2 A:GLU110 2.0 24.3 1.0 NZ A:LYS124 2.1 20.8 1.0 O A:HOH368 2.1 22.5 1.0 O A:HOH330 2.6 31.2 1.0 CD A:GLU110 2.7 27.3 1.0 OE1 A:GLU110 2.9 30.1 1.0 CE A:LYS124 2.9 21.6 1.0 CD A:LYS124 3.6 20.3 1.0 OE1 A:GLU122 4.1 21.9 1.0 CG A:GLU110 4.2 25.7 1.0 O A:GLY123 4.3 20.1 1.0 CD A:GLU122 4.8 24.2 1.0 CG A:LYS124 4.8 21.7 1.0 CB A:GLU110 4.8 23.0 1.0 CG A:GLU122 5.0 23.7 1.0

Zinc binding site 4 out of 5 in the Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:21.5 occ:1.00 ND1 B:HIS116 2.0 21.4 1.0 ND1 B:HIS78 2.0 22.0 1.0 SG B:CYS113 2.2 20.1 1.0 SE B:MSE121 2.5 26.1 0.7 CE1 B:HIS78 2.9 22.8 1.0 CE1 B:HIS116 2.9 20.6 1.0 CG B:HIS116 3.1 20.0 1.0 CG B:HIS78 3.1 22.3 1.0 CB B:CYS113 3.2 20.3 1.0 CE B:MSE121 3.3 25.9 1.0 CB B:HIS116 3.5 22.2 1.0 CB B:HIS78 3.5 18.8 1.0 CA B:HIS78 3.9 18.9 1.0 CG B:MSE121 4.0 28.2 1.0 NE2 B:HIS78 4.1 19.2 1.0 NE2 B:HIS116 4.1 23.3 1.0 CD2 B:HIS116 4.2 18.6 1.0 CD2 B:HIS78 4.2 21.3 1.0 N B:HIS116 4.3 19.1 1.0 O B:GLU77 4.3 21.0 1.0 CB B:MSE121 4.5 24.7 1.0 CA B:HIS116 4.5 20.2 1.0 N B:THR79 4.6 20.0 1.0 CA B:CYS113 4.6 19.9 1.0 CB B:TYR115 4.6 20.7 1.0 OD1 B:ASP51 4.7 23.8 1.0 C B:HIS78 4.8 22.2 1.0 CD2 B:TYR115 4.9 22.4 1.0 N B:HIS78 5.0 19.8 1.0 C B:TYR115 5.0 21.1 1.0

Zinc binding site 5 out of 5 in the Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:24.8 occ:1.00 OE1 B:GLU110 2.0 25.3 1.0 O B:HOH358 2.1 21.3 1.0 NZ B:LYS124 2.2 17.2 1.0 O B:HOH326 2.5 31.1 1.0 CD B:GLU110 2.8 29.0 1.0 OE2 B:GLU110 2.9 33.6 1.0 CE B:LYS124 2.9 19.0 1.0 CD B:LYS124 3.6 20.8 1.0 O B:HOH359 3.8 50.0 1.0 OE1 B:GLU122 4.2 19.7 1.0 CG B:GLU110 4.2 28.8 1.0 O B:GLY123 4.3 19.1 1.0 CG B:LYS124 4.8 19.3 1.0 CD B:GLU122 4.9 20.3 1.0 CB B:GLU110 4.9 22.5 1.0 CB B:GLU122 5.0 18.3 1.0

Y.Kim, N.Maltseva, S.Shatsman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Zinc Bound From Bacillus Anthracis To Be Published.