Zinc in PDB 4dgu: Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution

The structure of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution, PDB code: 4dgu was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.91 / 2.37
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	83.549, 127.510, 110.729, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 22.4

The structure of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution (pdb code 4dgu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 9 binding sites of Zinc where determined in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution, PDB code: 4dgu:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Zinc binding site 1 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:63.4 occ:1.00 OE2 A:GLU194 1.9 0.1 1.0 OE2 A:GLU175 2.1 73.7 1.0 CD A:GLU194 2.6 96.6 1.0 OE1 A:GLU175 2.6 57.3 1.0 CD A:GLU175 2.7 82.3 1.0 O A:HOH493 2.7 71.5 1.0 OE1 A:GLU194 2.8 82.8 1.0 CG A:GLU194 3.9 77.5 1.0 O A:HOH434 4.1 45.1 1.0 CG A:GLU175 4.1 69.5 1.0 O A:HOH481 4.5 60.7 1.0 ND2 A:ASN174 4.6 54.8 1.0 CB A:ASN174 4.8 53.8 1.0

Zinc binding site 2 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:68.5 occ:1.00 NE2 A:HIS127 2.2 51.1 1.0 O A:HOH483 2.2 61.3 1.0 O A:HOH475 2.3 56.8 1.0 O A:HOH464 2.9 56.2 1.0 CE1 A:HIS127 3.1 51.0 1.0 CD2 A:HIS127 3.2 49.0 1.0 O A:LYS122 3.5 60.6 1.0 O A:GLN125 3.9 49.1 1.0 CB A:GLN125 4.0 53.7 1.0 O A:HOH471 4.1 59.6 1.0 ND1 A:HIS127 4.3 50.8 1.0 CG A:HIS127 4.3 48.1 1.0 CG A:GLN125 4.3 57.5 1.0 CG A:LEU121 4.6 56.3 1.0 C A:LYS122 4.6 60.0 1.0 C A:GLN125 4.6 50.9 1.0 CA A:GLN125 4.7 51.3 1.0 CD1 A:LEU121 4.7 56.9 1.0 N A:LYS122 4.8 55.7 1.0 N A:GLN125 4.8 53.4 1.0

Zinc binding site 3 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:71.2 occ:1.00 OE2 A:GLU157 2.0 94.5 1.0 OE2 B:GLU219 2.0 62.4 1.0 O B:HOH406 2.1 32.2 1.0 CD A:GLU157 2.9 92.6 1.0 O B:HOH476 2.9 71.1 1.0 CD B:GLU219 3.0 72.3 1.0 OE1 A:GLU157 3.2 87.5 1.0 OE1 B:GLU219 3.4 71.5 1.0 CG A:LYS253 3.8 49.6 1.0 NZ B:LYS231 3.9 76.2 1.0 CG A:GLU157 4.2 67.9 1.0 CG B:GLU219 4.3 55.9 1.0 NZ A:LYS253 4.3 64.3 1.0 CE A:LYS253 4.4 65.7 1.0 CD A:LYS253 4.7 57.0 1.0 CB A:LYS253 4.9 44.5 1.0 N A:LYS253 5.0 43.9 1.0

Zinc binding site 4 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn304 b:75.4 occ:1.00 OE2 B:GLU157 2.0 92.0 1.0 OE2 A:GLU219 2.2 87.9 1.0 O A:HOH407 2.3 33.8 1.0 CD B:GLU157 2.8 93.9 1.0 CD A:GLU219 2.9 81.9 1.0 O B:HOH468 3.0 66.3 1.0 OE1 B:GLU157 3.2 75.5 1.0 OE1 A:GLU219 3.2 59.8 1.0 NZ A:LYS231 3.5 75.9 1.0 CG B:LYS253 3.7 47.4 1.0 CG B:GLU157 4.1 72.2 1.0 NZ B:LYS253 4.2 73.8 1.0 CG A:GLU219 4.3 68.9 1.0 CE B:LYS253 4.3 61.2 1.0 CD A:LYS231 4.6 63.1 1.0 CD B:LYS253 4.6 54.6 1.0 CE A:LYS231 4.6 66.2 1.0 N B:LYS253 4.7 47.0 1.0 CA B:LYS253 4.8 46.2 1.0 CB B:LYS253 4.8 45.3 1.0

Zinc binding site 5 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:78.0 occ:1.00 NE2 B:HIS127 2.2 49.8 1.0 O B:HOH456 2.3 58.8 1.0 O B:HOH481 2.6 72.5 1.0 O B:HOH466 2.9 62.4 1.0 CE1 B:HIS127 3.1 49.9 1.0 CD2 B:HIS127 3.2 48.5 1.0 O B:LYS122 3.4 65.2 1.0 O B:GLN125 4.0 53.3 1.0 CB B:GLN125 4.2 58.4 1.0 ND1 B:HIS127 4.3 49.9 1.0 CG B:HIS127 4.3 47.2 1.0 CG B:LEU121 4.5 64.4 1.0 CG B:GLN125 4.5 70.7 1.0 C B:LYS122 4.5 65.5 1.0 CD1 B:LEU121 4.6 66.1 1.0 N B:LYS122 4.6 63.9 1.0 C B:GLN125 4.7 54.9 1.0 CA B:GLN125 4.8 55.9 1.0 N B:GLN125 4.9 57.4 1.0

Zinc binding site 6 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn302 b:0.5 occ:1.00 OD1 B:ASP39 2.3 73.1 1.0 O B:HOH469 2.7 58.9 1.0 O B:HOH485 2.9 78.5 1.0 O B:HOH484 2.9 70.1 1.0 CG B:ASP39 3.2 70.5 1.0 OD2 B:ASP39 3.5 80.0 1.0 N B:ASP40 4.3 46.3 1.0 O B:ASP40 4.5 50.7 1.0 CB B:ASP39 4.6 53.4 1.0 OD2 B:ASP40 4.8 58.1 1.0 CB B:ASP40 4.9 45.4 1.0

Zinc binding site 7 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn303 b:77.9 occ:1.00 OD2 B:ASP159 2.0 61.4 1.0 CG B:ASP159 2.8 56.2 1.0 OD1 B:ASP159 2.9 55.9 1.0 O B:HOH450 4.1 57.9 1.0 CB B:ASP159 4.2 48.9 1.0 NH1 B:ARG249 4.6 42.5 1.0 O B:GLU157 4.8 54.9 1.0 O B:HOH445 4.8 56.5 1.0

Zinc binding site 8 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn304 b:0.0 occ:1.00 O B:HOH451 2.7 55.8 1.0 O B:HOH479 2.7 68.0 1.0 O A:HOH504 2.8 79.5 1.0 OE1 B:GLU236 3.0 0.8 1.0 OE1 A:GLU236 3.5 0.6 1.0 OE2 B:GLU236 3.5 79.1 1.0 CD B:GLU236 3.6 94.0 1.0 OD2 A:ASP260 4.3 65.5 1.0 CD A:GLU236 4.6 0.5 1.0 CB A:ASP260 5.0 43.7 1.0

Zinc binding site 9 out of 9 in the Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn305 b:0.7 occ:1.00 O B:HOH489 2.7 79.3 1.0 O B:HOH477 2.9 68.2 1.0 OD1 B:ASP260 2.9 56.0 1.0 CG B:ASP260 3.8 56.9 1.0 O B:HOH474 3.8 62.9 1.0 OD2 B:ASP260 3.9 69.8 1.0 O B:GLY261 4.5 44.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.