Zinc in PDB 4ce4: 39S Large Subunit of the Porcine Mitochondrial Ribosome

The binding sites of Zinc atom in the 39S Large Subunit of the Porcine Mitochondrial Ribosome (pdb code 4ce4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the 39S Large Subunit of the Porcine Mitochondrial Ribosome, PDB code: 4ce4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the 39S Large Subunit of the Porcine Mitochondrial Ribosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 39S Large Subunit of the Porcine Mitochondrial Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ 5:Zn1147 b:0.0 occ:1.00 SG 5:CYS123 2.3 0.0 1.0 SG 5:CYS113 2.3 0.0 1.0 SG 5:CYS110 2.3 0.0 1.0 SG 5:CYS126 2.3 0.0 1.0 CB 5:CYS123 2.9 0.0 1.0 CB 5:CYS110 3.3 0.0 1.0 CB 5:CYS126 3.7 0.0 1.0 CB 5:CYS113 3.8 0.0 1.0 N 5:CYS126 3.9 0.0 1.0 N 5:CYS113 3.9 0.0 1.0 CB 5:TYR125 4.3 0.0 1.0 CA 5:CYS113 4.4 0.0 1.0 CA 5:CYS123 4.4 0.0 1.0 CA 5:CYS126 4.4 0.0 1.0 CB 5:GLU112 4.4 0.0 1.0 CA 5:CYS110 4.7 0.0 1.0 N 5:TYR125 4.8 0.0 1.0 CB 5:HIS115 4.9 0.0 1.0 C 5:TYR125 4.9 0.0 1.0 CA 5:TYR125 4.9 0.0 1.0 N 5:GLY114 5.0 0.0 1.0 C 5:GLU112 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the 39S Large Subunit of the Porcine Mitochondrial Ribosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 39S Large Subunit of the Porcine Mitochondrial Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ 9:Zn1100 b:0.0 occ:1.00 ND1 9:HIS95 2.3 0.0 1.0 SG 9:CYS76 2.3 0.0 1.0 SG 9:CYS89 2.3 0.0 1.0 SG 9:CYS73 2.3 0.0 1.0 CB 9:CYS89 3.2 0.0 1.0 CG 9:HIS95 3.3 0.0 1.0 CE1 9:HIS95 3.3 0.0 1.0 CB 9:HIS95 3.5 0.0 1.0 CB 9:CYS73 3.6 0.0 1.0 CB 9:CYS76 3.7 0.0 1.0 N 9:CYS76 3.8 0.0 1.0 OG1 9:THR91 3.8 0.0 1.0 N 9:CYS73 3.9 0.0 1.0 CA 9:CYS76 4.0 0.0 1.0 CA 9:CYS73 4.3 0.0 1.0 C 9:ASP75 4.3 0.0 1.0 NE2 9:HIS95 4.4 0.0 1.0 CD2 9:HIS95 4.4 0.0 1.0 CA 9:CYS89 4.6 0.0 1.0 C 9:CYS73 4.6 0.0 1.0 CB 9:ASP75 4.7 0.0 1.0 N 9:ASP75 4.7 0.0 1.0 O 9:CYS73 4.8 0.0 1.0 CA 9:ASP75 4.8 0.0 1.0 CB 9:ARG72 4.8 0.0 1.0 O 9:ASP75 4.8 0.0 1.0 C 9:ARG72 4.9 0.0 1.0

B.J.Greber, D.Boehringer, A.Leitner, P.Bieri, F.Voigts-Hoffmann, J.P.Erzberger, M.Leibundgut, R.Aebersold, N.Ban. Architecture of the Large Subunit of the Mammalian Mitochondrial Ribosome. Nature V. 505 515 2014.
ISSN: ISSN 0028-0836
PubMed: 24362565
DOI: 10.1038/NATURE12890