Zinc in PDB 4ajx: Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin

The structure of Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin, PDB code: 4ajx was solved by D.B.Steensgaard, G.Schluckebier, H.M.Strauss, M.Norrman, J.K.Thomsen, A.V.Friderichsen, S.Havelund, I.Jonassen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.497 / 1.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.310, 62.490, 57.270, 90.00, 111.80, 90.00
R / Rfree (%)	14.05 / 15.96

The structure of Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Zinc atom in the Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin (pdb code 4ajx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin, PDB code: 4ajx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn1029 b:11.6 occ:1.00 N1 L:IMD1031 1.8 18.6 1.0 NE2 L:HIS10 2.0 9.8 1.0 NE2 F:HIS10 2.0 13.6 1.0 NE2 B:HIS10 2.0 9.9 1.0 C5 L:IMD1031 2.8 17.5 1.0 C2 L:IMD1031 2.9 15.8 1.0 CE1 L:HIS10 2.9 12.6 1.0 H5 L:IMD1031 3.0 21.0 1.0 CE1 B:HIS10 3.0 12.2 1.0 CD2 F:HIS10 3.0 13.0 1.0 CE1 F:HIS10 3.0 14.5 1.0 CD2 B:HIS10 3.0 8.2 1.0 CD2 L:HIS10 3.1 9.2 1.0 HE1 L:HIS10 3.1 15.1 1.0 HE1 B:HIS10 3.1 14.7 1.0 HD2 F:HIS10 3.2 15.6 1.0 H2 L:IMD1031 3.2 19.0 1.0 HE1 F:HIS10 3.2 17.4 1.0 HD2 B:HIS10 3.2 9.9 1.0 HD2 L:HIS10 3.3 11.0 1.0 HB3 F:LEU6 3.9 13.8 1.0 C4 L:IMD1031 3.9 19.8 1.0 N3 L:IMD1031 4.0 20.4 1.0 ND1 L:HIS10 4.1 12.4 1.0 ND1 B:HIS10 4.1 12.4 1.0 ND1 F:HIS10 4.1 14.8 1.0 CG F:HIS10 4.1 12.2 1.0 CG L:HIS10 4.2 8.9 1.0 HB3 L:LEU6 4.2 17.3 1.0 CG B:HIS10 4.2 8.8 1.0 O D:HOH2040 4.3 37.2 1.0 HB3 B:LEU6 4.4 13.2 1.0 HD11 F:LEU6 4.7 22.7 1.0 O F:LEU6 4.7 11.3 1.0 HG F:SER9 4.8 16.8 0.2 O L:LEU6 4.8 10.9 1.0 H4 L:IMD1031 4.8 23.7 1.0 HD1 L:HIS10 4.8 14.9 1.0 HD1 B:HIS10 4.9 14.9 1.0 HG L:SER9 4.9 13.4 0.3 CB F:LEU6 4.9 11.5 1.0 HN3 L:IMD1031 4.9 24.5 1.0 HD1 F:HIS10 4.9 17.8 1.0 HD23 B:LEU6 4.9 17.1 1.0 O B:LEU6 5.0 10.2 1.0 O B:HOH2017 5.0 34.0 1.0 OG F:SER9 5.0 14.0 0.2

Zinc binding site 2 out of 2 in the Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By An Engineered Acylated Insulin within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn1030 b:10.8 occ:1.00 O28 H:16E1031 1.9 11.5 1.0 NE2 D:HIS10 2.0 10.6 1.0 NE2 H:HIS10 2.0 9.8 1.0 NE2 J:HIS10 2.1 10.8 1.0 C26 H:16E1031 2.8 13.9 1.0 CE1 D:HIS10 3.0 12.2 1.0 O27 H:16E1031 3.0 12.3 1.0 CE1 H:HIS10 3.0 11.8 1.0 CE1 J:HIS10 3.0 14.5 1.0 CD2 H:HIS10 3.1 9.7 1.0 CD2 J:HIS10 3.1 9.7 1.0 CD2 D:HIS10 3.1 10.3 1.0 HE1 D:HIS10 3.1 14.7 1.0 HE1 H:HIS10 3.2 14.2 1.0 HE1 J:HIS10 3.2 17.4 1.0 HD2 J:HIS10 3.2 11.6 1.0 HD2 H:HIS10 3.3 11.6 1.0 HD2 D:HIS10 3.3 12.3 1.0 HB3 J:LEU6 3.8 14.4 1.0 HB3 H:LEU6 4.0 13.3 1.0 HB3 D:LEU6 4.1 14.4 1.0 ND1 D:HIS10 4.1 12.5 1.0 ND1 H:HIS10 4.1 11.1 1.0 ND1 J:HIS10 4.2 14.8 1.0 CG H:HIS10 4.2 9.3 1.0 CG D:HIS10 4.2 9.9 1.0 CG J:HIS10 4.2 10.4 1.0 C25 H:16E1031 4.2 14.5 1.0 O D:HOH2041 4.6 42.9 1.0 HD23 H:LEU6 4.6 17.3 1.0 O J:LEU6 4.7 12.6 1.0 HD11 J:LEU6 4.7 20.5 1.0 HD11 D:LEU6 4.7 19.9 1.0 HD11 H:LEU6 4.7 19.0 1.0 CB J:LEU6 4.7 12.0 1.0 O D:LEU6 4.9 10.9 1.0 C24 H:16E1031 4.9 18.9 1.0 HD1 D:HIS10 4.9 15.1 1.0 O H:LEU6 4.9 10.0 1.0 HD1 H:HIS10 4.9 13.3 1.0 CB H:LEU6 4.9 11.1 1.0 HD1 J:HIS10 4.9 17.7 1.0 CB D:LEU6 5.0 12.0 1.0

D.B.Steensgaard, G.Schluckebier, H.M.Strauss, M.Norrman, J.K.Thomsen, A.V.Friderichsen, S.Havelund, I.Jonassen. Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures By the Engineered Acylated Insulin Degludec. Biochemistry V. 52 295 2013.
ISSN: ISSN 0006-2960
PubMed: 23256685
DOI: 10.1021/BI3008609