Atomistry » Zinc » PDB 4a3f-4aa6 » 4a47
Atomistry »
  Zinc »
    PDB 4a3f-4aa6 »
      4a47 »

Zinc in PDB 4a47: Crosstalk Between Cu(I) and Zn(II) Homeostasis

Protein crystallography data

The structure of Crosstalk Between Cu(I) and Zn(II) Homeostasis, PDB code: 4a47 was solved by A.Badarau, A.Basle, S.J.Firbank, C.Denninson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.98 / 1.90
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 85.620, 85.620, 188.142, 90.00, 90.00, 120.00
R / Rfree (%) 19.466 / 24.302

Zinc Binding Sites:

The binding sites of Zinc atom in the Crosstalk Between Cu(I) and Zn(II) Homeostasis (pdb code 4a47). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crosstalk Between Cu(I) and Zn(II) Homeostasis, PDB code: 4a47:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 4a47

Go back to Zinc Binding Sites List in 4a47
Zinc binding site 1 out of 4 in the Crosstalk Between Cu(I) and Zn(II) Homeostasis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crosstalk Between Cu(I) and Zn(II) Homeostasis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1065

b:22.2
occ:0.50
SG A:CYS12 2.3 23.0 1.0
SG A:CYS15 2.3 23.4 1.0
CB A:CYS12 3.3 22.5 1.0
N A:CYS15 3.4 22.6 1.0
CB A:CYS15 3.5 22.7 1.0
N A:CYS12 3.7 22.5 1.0
CA A:CYS15 3.9 22.7 1.0
CA A:CYS12 4.0 22.4 1.0
C A:SER14 4.4 22.5 1.0
C A:CYS12 4.5 21.4 1.0
O A:CYS12 4.5 20.4 1.0
CB A:SER14 4.6 23.4 1.0
C A:ASP11 4.7 23.4 1.0
N A:ASP11 4.8 23.7 1.0
N A:SER14 4.8 21.8 1.0
CA A:SER14 4.8 22.5 1.0

Zinc binding site 2 out of 4 in 4a47

Go back to Zinc Binding Sites List in 4a47
Zinc binding site 2 out of 4 in the Crosstalk Between Cu(I) and Zn(II) Homeostasis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crosstalk Between Cu(I) and Zn(II) Homeostasis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1065

b:24.3
occ:0.50
SG B:CYS12 2.3 24.6 1.0
SG B:CYS15 2.4 23.4 1.0
CB B:CYS12 3.3 23.8 1.0
CB B:CYS15 3.5 23.5 1.0
N B:CYS15 3.5 23.2 1.0
N B:CYS12 3.7 24.5 1.0
CA B:CYS15 3.9 23.0 1.0
CA B:CYS12 4.0 24.5 1.0
C B:SER14 4.4 23.5 1.0
O B:CYS12 4.4 24.4 1.0
C B:CYS12 4.4 24.4 1.0
CB B:SER14 4.5 23.9 1.0
C B:ASP11 4.6 25.4 1.0
O B:HOH2007 4.7 20.1 0.5
N B:ASP11 4.8 25.2 1.0
CA B:SER14 4.8 23.9 1.0
N B:SER14 4.8 23.9 1.0

Zinc binding site 3 out of 4 in 4a47

Go back to Zinc Binding Sites List in 4a47
Zinc binding site 3 out of 4 in the Crosstalk Between Cu(I) and Zn(II) Homeostasis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crosstalk Between Cu(I) and Zn(II) Homeostasis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1065

b:26.1
occ:0.50
SG C:CYS12 2.3 26.5 1.0
SG C:CYS15 2.4 25.1 1.0
CB C:CYS12 3.3 24.6 1.0
N C:CYS15 3.5 25.1 1.0
CB C:CYS15 3.6 25.3 1.0
N C:CYS12 3.8 24.9 1.0
CA C:CYS15 3.9 25.9 1.0
CA C:CYS12 4.0 24.8 1.0
C C:SER14 4.4 25.3 1.0
C C:CYS12 4.5 24.4 1.0
O C:CYS12 4.5 24.1 1.0
CB C:SER14 4.5 25.4 1.0
C C:ASP11 4.7 25.5 1.0
N C:ASP11 4.8 26.3 1.0
CA C:SER14 4.8 25.1 1.0
N C:SER14 4.8 24.4 1.0

Zinc binding site 4 out of 4 in 4a47

Go back to Zinc Binding Sites List in 4a47
Zinc binding site 4 out of 4 in the Crosstalk Between Cu(I) and Zn(II) Homeostasis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crosstalk Between Cu(I) and Zn(II) Homeostasis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1065

b:28.4
occ:0.50
SG D:CYS15 2.3 27.9 1.0
SG D:CYS12 2.4 26.2 1.0
N D:CYS15 3.4 25.9 1.0
CB D:CYS12 3.4 25.1 1.0
CB D:CYS15 3.5 26.5 1.0
N D:CYS12 3.7 26.2 1.0
CA D:CYS15 3.8 26.8 1.0
CA D:CYS12 4.0 25.7 1.0
C D:SER14 4.3 26.3 1.0
O D:CYS12 4.5 26.0 1.0
C D:CYS12 4.5 25.6 1.0
CB D:SER14 4.5 26.4 1.0
C D:ASP11 4.7 26.9 1.0
CA D:SER14 4.8 26.2 1.0
N D:ASP11 4.8 28.7 1.0
N D:SER14 4.8 25.9 1.0

Reference:

A.Badarau, A.Basle, S.J.Firbank, C.Dennison. Investigating the Role of Zinc and Copper Binding Motifs of Trafficking Sites in the Cyanobacterium Synechocystis Pcc 6803. Biochemistry V. 52 6816 2013.
ISSN: ISSN 0006-2960
PubMed: 24050657
DOI: 10.1021/BI400492T
Page generated: Wed Dec 16 05:02:17 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy