Zinc in PDB 3w0f: Crystal Structure of Mouse Endonuclease VIII-Like 3 (MNEIL3)

The structure of Crystal Structure of Mouse Endonuclease VIII-Like 3 (MNEIL3), PDB code: 3w0f was solved by M.Liu, K.Imamura, A.M.Averill, S.S.Wallace, S.Doublie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.76 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	115.580, 43.823, 77.645, 90.00, 128.96, 90.00
R / Rfree (%)	19.7 / 23.5

The structure of Crystal Structure of Mouse Endonuclease VIII-Like 3 (MNEIL3) also contains other interesting chemical elements:

Iodine

(I)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of Mouse Endonuclease VIII-Like 3 (MNEIL3) (pdb code 3w0f). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Mouse Endonuclease VIII-Like 3 (MNEIL3), PDB code: 3w0f:

Zinc binding site 1 out of 1 in the Crystal Structure of Mouse Endonuclease VIII-Like 3 (MNEIL3)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mouse Endonuclease VIII-Like 3 (MNEIL3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:54.2 occ:1.00 SG A:CYS277 2.1 41.2 1.0 SG A:CYS280 2.3 55.2 1.0 SG A:CYS255 2.4 51.9 1.0 SG A:CYS258 2.5 59.7 1.0 CB A:CYS255 3.0 51.1 1.0 CB A:CYS277 3.1 40.4 1.0 CB A:CYS280 3.3 52.2 1.0 CB A:CYS258 3.7 62.6 1.0 N A:CYS280 3.7 51.8 1.0 N A:CYS258 3.8 63.4 1.0 CA A:CYS280 4.1 51.5 1.0 CB A:GLN257 4.3 64.3 0.0 CA A:CYS258 4.4 62.8 1.0 CB A:HIS279 4.4 55.8 1.0 CA A:CYS255 4.5 52.6 1.0 OE1 A:GLN257 4.5 64.4 0.0 CA A:CYS277 4.5 40.9 1.0 CE2 A:PHE201 4.5 31.1 1.0 ND1 A:HIS279 4.6 60.1 1.0 C A:HIS279 4.8 52.6 1.0 CG A:HIS279 4.8 58.7 1.0 C A:GLN257 4.9 64.2 1.0 C A:CYS258 5.0 62.7 1.0 CA A:GLN257 5.0 64.4 1.0

M.Liu, K.Imamura, A.M.Averill, S.S.Wallace, S.Doublie. Structural Characterization of A Mouse Ortholog of Human NEIL3 with A Marked Preference For Single-Stranded Dna Structure V. 21 247 2013.
ISSN: ISSN 0969-2126
PubMed: 23313161
DOI: 10.1016/J.STR.2012.12.008