Zinc in PDB 3ve5: Structure of Recombination Mediator Protein RECR16-196 Deletion Mutant

The structure of Structure of Recombination Mediator Protein RECR16-196 Deletion Mutant, PDB code: 3ve5 was solved by Q.Tang, X.X.Yan, D.C.Liang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.93 / 2.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	84.384, 84.753, 72.613, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 22.9

The binding sites of Zinc atom in the Structure of Recombination Mediator Protein RECR16-196 Deletion Mutant (pdb code 3ve5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Recombination Mediator Protein RECR16-196 Deletion Mutant, PDB code: 3ve5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Recombination Mediator Protein RECR16-196 Deletion Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Recombination Mediator Protein RECR16-196 Deletion Mutant within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn201 b:46.3 occ:1.00 SG D:CYS67 2.3 49.7 1.0 SG D:CYS55 2.4 46.2 1.0 SG D:CYS58 2.5 64.5 1.0 SG D:CYS70 2.5 59.8 1.0 CB D:CYS67 3.0 29.3 1.0 CB D:CYS70 3.1 49.3 1.0 CB D:CYS55 3.2 33.7 1.0 CB D:CYS58 3.4 54.1 1.0 N D:CYS58 3.5 50.8 1.0 N D:CYS67 3.8 52.7 1.0 CA D:CYS67 3.9 43.1 1.0 CA D:CYS58 4.0 54.7 1.0 N D:CYS70 4.1 58.7 1.0 CA D:CYS70 4.2 54.1 1.0 CB D:ILE57 4.4 69.1 1.0 C D:ILE57 4.6 51.9 1.0 C D:CYS67 4.6 49.9 1.0 CA D:CYS55 4.7 35.5 1.0 C D:CYS58 4.8 50.7 1.0 O D:CYS67 4.8 51.0 1.0 N D:PHE59 4.8 37.9 1.0 CA D:ILE57 4.8 51.7 1.0 N D:ILE57 4.9 48.7 1.0 C D:VAL66 5.0 57.1 1.0 CB D:ASN60 5.0 25.3 1.0 CG2 D:ILE57 5.0 65.9 1.0

Zinc binding site 2 out of 2 in the Structure of Recombination Mediator Protein RECR16-196 Deletion Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Recombination Mediator Protein RECR16-196 Deletion Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:52.6 occ:1.00 SG A:CYS55 2.3 48.5 1.0 SG A:CYS70 2.4 67.8 1.0 SG A:CYS58 2.5 47.9 1.0 SG A:CYS67 2.6 47.9 1.0 CB A:CYS67 3.2 45.9 1.0 CB A:CYS70 3.2 37.8 1.0 CB A:CYS55 3.3 46.0 1.0 CB A:CYS58 3.4 39.5 1.0 N A:CYS58 3.5 48.4 1.0 N A:CYS67 3.7 47.9 1.0 CA A:CYS58 4.0 38.5 1.0 CA A:CYS67 4.0 47.7 1.0 N A:CYS70 4.4 43.8 1.0 O A:HOH306 4.4 85.5 1.0 CA A:CYS70 4.4 44.7 1.0 C A:ILE57 4.4 55.7 1.0 CB A:ILE57 4.5 53.4 1.0 O A:CYS67 4.6 46.4 1.0 C A:CYS67 4.7 51.9 1.0 CA A:ILE57 4.7 54.1 1.0 CA A:CYS55 4.7 46.9 1.0 N A:ILE57 4.8 44.0 1.0 C A:CYS58 4.8 33.9 1.0 N A:PHE59 4.8 45.8 1.0 CG2 A:ILE57 4.9 52.0 1.0 C A:VAL66 4.9 51.1 1.0 CG1 A:VAL66 5.0 55.5 1.0

Q.Tang, P.Gao, Y.P.Liu, A.Gao, X.M.An, S.Liu, X.X.Yan, D.C.Liang. Recor Complex Including Recr N-N Dimer and Reco Monomer Displays A High Affinity For Ssdna Nucleic Acids Res. V. 40 11115 2012.
ISSN: ISSN 0305-1048
PubMed: 23019218
DOI: 10.1093/NAR/GKS889