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Zinc in PDB 3uh0: Crystal Structure of the Yeast Mitochondrial Threonyl-Trna Synthetase (MST1) in Complex with Threonyl Sulfamoyl Adenylate

Enzymatic activity of Crystal Structure of the Yeast Mitochondrial Threonyl-Trna Synthetase (MST1) in Complex with Threonyl Sulfamoyl Adenylate

All present enzymatic activity of Crystal Structure of the Yeast Mitochondrial Threonyl-Trna Synthetase (MST1) in Complex with Threonyl Sulfamoyl Adenylate:
6.1.1.3;

Protein crystallography data

The structure of Crystal Structure of the Yeast Mitochondrial Threonyl-Trna Synthetase (MST1) in Complex with Threonyl Sulfamoyl Adenylate, PDB code: 3uh0 was solved by K.M.Peterson, J.Ling, I.Simonovic, C.Cho, D.Soll, M.Simonovic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.02 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.484, 68.484, 192.276, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 25.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Yeast Mitochondrial Threonyl-Trna Synthetase (MST1) in Complex with Threonyl Sulfamoyl Adenylate (pdb code 3uh0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Yeast Mitochondrial Threonyl-Trna Synthetase (MST1) in Complex with Threonyl Sulfamoyl Adenylate, PDB code: 3uh0:

Zinc binding site 1 out of 1 in 3uh0

Go back to Zinc Binding Sites List in 3uh0
Zinc binding site 1 out of 1 in the Crystal Structure of the Yeast Mitochondrial Threonyl-Trna Synthetase (MST1) in Complex with Threonyl Sulfamoyl Adenylate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Yeast Mitochondrial Threonyl-Trna Synthetase (MST1) in Complex with Threonyl Sulfamoyl Adenylate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:35.2
occ:1.00
 ND1 A:HIS319 2.2 24.9 1.0
NE2 A:HIS184 2.3 30.6 1.0
OG1 A:TSB1002 2.3 23.5 1.0
N A:TSB1002 2.4 21.6 1.0
SG A:CYS133 2.5 31.4 1.0
CA A:TSB1002 2.9 22.2 1.0
CB A:TSB1002 3.1 20.7 1.0
CD2 A:HIS184 3.2 17.1 1.0
CG A:HIS319 3.2 19.3 1.0
CE1 A:HIS319 3.2 31.7 1.0
CE1 A:HIS184 3.3 30.5 1.0
CB A:HIS319 3.4 15.8 1.0
CB A:CYS133 3.5 34.7 1.0
O A:HOH495 4.0 17.2 1.0
OH A:TYR270 4.2 20.2 1.0
CA A:CYS133 4.3 28.0 1.0
N A:CYS133 4.3 28.1 1.0
NE2 A:HIS319 4.3 26.8 1.0
CD2 A:HIS319 4.3 23.5 1.0
C A:TSB1002 4.3 24.4 1.0
CG2 A:TSB1002 4.3 16.7 1.0
OD1 A:ASP182 4.3 23.1 1.0
CG A:HIS184 4.3 25.6 1.0
OD2 A:ASP182 4.4 23.1 1.0
ND1 A:HIS184 4.4 21.3 1.0
NE2 A:GLN292 4.5 20.5 1.0
CA A:HIS319 4.5 20.1 1.0
CG A:ASP182 4.8 24.6 1.0
O A:TSB1002 4.9 19.6 1.0
CZ A:TYR270 4.9 26.3 1.0
SD A:MET131 5.0 30.5 1.0

Reference:

J.Ling, K.M.Peterson, I.Simonovic, C.Cho, D.Soll, M.Simonovic. Yeast Mitochondrial Threonyl-Trna Synthetase Recognizes Trna Isoacceptors By Distinct Mechanisms and Promotes Cun Codon Reassignment. Proc.Natl.Acad.Sci.Usa V. 109 3281 2012.
ISSN: ISSN 0027-8424
PubMed: 22343532
DOI: 10.1073/PNAS.1200109109
Page generated: Sat Oct 26 17:19:48 2024

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