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Zinc in PDB 3ued: Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group).

Protein crystallography data

The structure of Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group)., PDB code: 3ued was solved by E.Niedzialkowska, P.J.Porebski, F.Wang, J.M.Higgins, P.T.Stukenberg, W.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.28 / 2.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.415, 71.276, 83.136, 90.00, 129.91, 90.00
R / Rfree (%) 19.2 / 24.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group). (pdb code 3ued). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group)., PDB code: 3ued:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3ued

Go back to Zinc Binding Sites List in 3ued
Zinc binding site 1 out of 2 in the Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn143

b:65.7
occ:1.00
NE2 A:HIS77 2.0 77.7 1.0
SG A:CYS57 2.1 64.0 1.0
SG A:CYS84 2.2 67.9 1.0
SG A:CYS60 2.2 65.3 1.0
CE1 A:HIS77 2.5 72.5 1.0
CB A:CYS57 3.0 70.9 1.0
CB A:CYS84 3.2 69.5 1.0
CB A:CYS60 3.3 60.5 1.0
CD2 A:HIS77 3.3 74.7 1.0
N A:CYS60 3.7 60.4 1.0
ND1 A:HIS77 3.8 67.5 1.0
CA A:CYS60 4.0 58.8 1.0
CG A:HIS77 4.2 69.6 1.0
CA A:CYS57 4.4 65.9 1.0
CB A:PHE59 4.6 58.5 1.0
CA A:CYS84 4.6 72.4 1.0
OG A:SER81 4.7 68.1 1.0
C A:PHE59 4.7 58.4 1.0
C A:CYS60 4.8 59.4 1.0
CB A:SER81 4.9 70.5 1.0
N A:PHE61 4.9 58.0 1.0
CB A:PHE86 5.0 60.3 1.0

Zinc binding site 2 out of 2 in 3ued

Go back to Zinc Binding Sites List in 3ued
Zinc binding site 2 out of 2 in the Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group). within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn143

b:63.5
occ:1.00
NE2 C:HIS77 2.0 80.7 1.0
SG C:CYS84 2.1 66.7 1.0
SG C:CYS57 2.2 51.8 1.0
SG C:CYS60 2.3 64.9 1.0
CE1 C:HIS77 2.6 74.4 1.0
CB C:CYS57 3.1 59.7 1.0
CB C:CYS84 3.1 72.0 1.0
CB C:CYS60 3.2 65.3 1.0
CD2 C:HIS77 3.3 82.7 1.0
N C:CYS60 3.6 62.0 1.0
ND1 C:HIS77 3.8 67.6 1.0
CA C:CYS60 4.0 64.4 1.0
CG C:HIS77 4.2 73.2 1.0
CA C:CYS57 4.5 58.5 1.0
CA C:CYS84 4.5 74.0 1.0
CB C:PHE59 4.6 56.8 1.0
OG C:SER81 4.7 77.6 1.0
C C:PHE59 4.7 56.8 1.0
C C:CYS60 4.7 60.8 1.0
CB C:SER81 4.8 82.5 1.0
N C:PHE61 4.9 60.1 1.0

Reference:

E.Niedzialkowska, F.Wang, P.J.Porebski, W.Minor, J.M.Higgins, P.T.Stukenberg. Molecular Basis For Phosphospecific Recognition of Histone H3 Tails By Survivin Paralogues at Inner Centromeres. Mol.Biol.Cell V. 23 1457 2012.
ISSN: ISSN 1059-1524
PubMed: 22357620
DOI: 10.1091/MBC.E11-11-0904
Page generated: Sat Oct 26 17:13:51 2024

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