Zinc in PDB 3t7l: Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution

The structure of Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution, PDB code: 3t7l was solved by A.Chaikuad, E.Williams, K.Guo, C.Sanvitale, G.Berridge, T.Krojer, J.R.C.Muniz, P.Canning, C.Phillips, A.Shrestha, F.Von Delft, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.01 / 1.09
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	42.944, 42.944, 76.879, 90.00, 90.00, 90.00
R / Rfree (%)	14.2 / 15.4

The binding sites of Zinc atom in the Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution (pdb code 3t7l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution, PDB code: 3t7l:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:6.4 occ:1.00 SG A:CYS756 2.3 7.2 1.0 SG A:CYS780 2.3 7.3 1.0 SG A:CYS777 2.4 7.9 1.0 SG A:CYS753 2.4 6.2 1.0 CB A:CYS780 3.2 6.9 1.0 CB A:CYS753 3.3 5.7 1.0 CB A:CYS756 3.3 7.8 1.0 CB A:CYS777 3.5 7.5 1.0 N A:CYS756 3.8 6.8 1.0 N A:CYS777 3.9 6.6 1.0 CA A:CYS756 4.1 7.2 1.0 CG1 A:VAL758 4.2 7.4 1.0 N A:CYS780 4.2 8.1 1.0 CA A:CYS777 4.2 7.3 1.0 CA A:CYS780 4.4 7.0 1.0 CA A:CYS753 4.7 6.0 1.0 O A:CYS777 4.7 8.0 1.0 CB A:ASN755 4.7 6.0 1.0 C A:CYS777 4.8 7.7 1.0 C A:CYS756 4.8 6.6 1.0 C A:ASN755 4.9 7.0 1.0 N A:GLN757 5.0 6.9 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2 b:6.9 occ:1.00 SG A:CYS800 2.3 8.4 1.0 SG A:CYS772 2.3 7.4 1.0 SG A:CYS797 2.4 7.1 1.0 SG A:CYS769 2.4 7.2 1.0 CB A:CYS769 3.2 6.7 1.0 CB A:CYS800 3.2 8.4 1.0 CB A:CYS772 3.3 7.8 1.0 CB A:CYS797 3.5 6.9 1.0 N A:CYS772 3.8 7.3 1.0 N A:CYS797 3.9 7.0 1.0 CA A:CYS772 4.1 8.1 1.0 N A:CYS800 4.2 7.3 1.0 CA A:CYS797 4.3 7.1 1.0 CA A:CYS800 4.3 8.1 1.0 CE1 A:PHE776 4.4 5.9 1.0 O A:HOH45 4.4 20.9 1.0 CZ A:PHE776 4.4 6.0 1.0 CB A:ALA771 4.6 9.1 1.0 CA A:CYS769 4.6 7.4 1.0 C A:ALA771 4.7 8.3 1.0 C A:CYS797 4.9 7.3 1.0 C A:CYS772 4.9 6.6 1.0 O A:CYS797 5.0 7.9 1.0

A.Chaikuad, E.Williams, K.Guo, C.Sanvitale, G.Berridge, T.Krojer, J.R.C.Muniz, P.Canning, C.Phillips, A.Shrestha, F.Von Delft, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock, Structural Genomics Consortium (Sgc). Crystal Structure of the Fyve Domain of Endofin (ZFYVE16) at 1.1A Resolution To Be Published.