Zinc in PDB 3t7e: ATG8 Transfer From ATG7 to ATG3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway

The structure of ATG8 Transfer From ATG7 to ATG3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway, PDB code: 3t7e was solved by A.M.Taherbhoy, S.W.Tait, S.E.Kaiser, A.H.Williams, A.Deng, A.Nourse, M.Hammel, I.Kurinov, C.O.Rock, D.R.Green, B.A.Schulman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.51 / 2.25
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	66.556, 66.556, 222.268, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 23.3

The binding sites of Zinc atom in the ATG8 Transfer From ATG7 to ATG3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway (pdb code 3t7e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the ATG8 Transfer From ATG7 to ATG3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway, PDB code: 3t7e:

Zinc binding site 1 out of 1 in the ATG8 Transfer From ATG7 to ATG3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of ATG8 Transfer From ATG7 to ATG3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn252 b:61.5 occ:1.00 SG A:CYS572 2.3 53.7 1.0 SG A:CYS569 2.3 52.1 1.0 SG A:CYS485 2.3 48.5 1.0 SG A:CYS488 2.3 50.4 1.0 CB A:CYS569 3.1 51.3 1.0 CB A:CYS572 3.4 50.2 1.0 N A:CYS488 3.5 53.2 1.0 CB A:CYS488 3.5 56.8 1.0 CB A:CYS485 3.6 45.4 1.0 N A:CYS485 3.6 47.9 1.0 CA A:CYS488 3.6 60.9 1.0 N A:CYS572 3.8 50.8 1.0 CA A:CYS485 4.1 50.8 1.0 CA A:CYS572 4.1 50.1 1.0 C A:PHE487 4.1 49.8 1.0 O A:CYS485 4.4 52.2 1.0 C A:CYS485 4.4 42.6 1.0 CA A:CYS569 4.5 50.3 1.0 CB A:PHE487 4.6 49.1 1.0 N A:PHE487 4.6 44.3 1.0 CA A:PHE487 4.6 47.6 1.0 CB A:ALA571 4.6 41.8 1.0 C A:ALA571 4.7 53.0 1.0 C A:GLY484 4.7 52.7 1.0 C A:CYS572 4.8 49.2 1.0 O A:PHE487 4.8 52.8 1.0 CA A:GLY484 4.9 59.9 1.0 N A:ALA571 4.9 49.0 1.0 CA A:ALA571 5.0 47.0 1.0

A.M.Taherbhoy, S.W.Tait, S.E.Kaiser, A.H.Williams, A.Deng, A.Nourse, M.Hammel, I.Kurinov, C.O.Rock, D.R.Green, B.A.Schulman. ATG8 Transfer From ATG7 to ATG3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway. Mol.Cell V. 44 451 2011.
ISSN: ISSN 1097-2765
PubMed: 22055190
DOI: 10.1016/J.MOLCEL.2011.08.034