Zinc in PDB 3sub: Crystal Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase Activating Protein

The structure of Crystal Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase Activating Protein, PDB code: 3sub was solved by W.J.Cook, D.Chattopadhyay, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.81 / 2.40
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	95.900, 95.900, 92.800, 90.00, 90.00, 120.00
R / Rfree (%)	20.9 / 22.7

The binding sites of Zinc atom in the Crystal Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase Activating Protein (pdb code 3sub). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase Activating Protein, PDB code: 3sub:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase Activating Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase Activating Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn161 b:29.6 occ:1.00 SG A:CYS45 2.3 28.4 1.0 SG A:CYS25 2.3 30.2 1.0 SG A:CYS42 2.3 28.0 1.0 SG A:CYS22 2.4 28.5 1.0 CB A:CYS45 3.2 27.9 1.0 CB A:CYS22 3.3 29.7 1.0 CB A:CYS25 3.3 30.5 1.0 CB A:CYS42 3.5 28.6 1.0 N A:CYS25 3.8 28.8 1.0 N A:CYS42 4.0 26.3 1.0 CA A:CYS25 4.1 30.2 1.0 O A:HOH285 4.1 37.7 1.0 N A:CYS45 4.3 29.3 1.0 CA A:CYS42 4.3 27.6 1.0 CA A:CYS45 4.3 28.3 1.0 CG1 A:ILE27 4.5 32.8 1.0 CA A:CYS22 4.7 29.3 1.0 C A:CYS25 4.7 31.1 1.0 N A:GLY26 4.8 30.6 1.0 C A:ASP24 4.8 28.4 1.0 CB A:ASP24 4.8 26.6 1.0 C A:CYS42 4.9 27.9 1.0 O A:CYS42 5.0 27.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase Activating Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase Activating Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn161 b:43.8 occ:1.00 SG B:CYS25 2.2 46.1 1.0 SG B:CYS42 2.3 47.1 1.0 SG B:CYS45 2.3 40.8 1.0 SG B:CYS22 2.4 44.1 1.0 CB B:CYS45 3.2 40.2 1.0 CB B:CYS22 3.3 46.7 1.0 CB B:CYS25 3.3 45.0 1.0 CB B:CYS42 3.5 48.3 1.0 N B:CYS25 3.9 41.1 1.0 N B:CYS42 4.0 43.6 1.0 CA B:CYS25 4.1 43.6 1.0 CG2 B:ILE27 4.2 52.9 1.0 N B:CYS45 4.2 44.0 1.0 CA B:CYS45 4.3 41.1 1.0 CA B:CYS42 4.4 46.9 1.0 CA B:CYS22 4.7 46.0 1.0 C B:CYS25 4.9 45.8 1.0 C B:ASP24 4.9 39.2 1.0 N B:GLY26 4.9 45.6 1.0 CB B:ASP24 4.9 36.5 1.0 C B:CYS42 4.9 46.7 1.0

W.J.Cook, O.Senkovich, D.Chattopadhyay. Structure of the Catalytic Domain of Plasmodium Falciparum Arf Gtpase-Activating Protein (Arfgap). Acta Crystallogr.,Sect.F V. 67 1339 2011.
ISSN: ESSN 1744-3091
PubMed: 22102228
DOI: 10.1107/S1744309111032507