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Zinc in PDB 3su3: Crystal Structure of NS3/4A Protease in Complex with Vaniprevir

Protein crystallography data

The structure of Crystal Structure of NS3/4A Protease in Complex with Vaniprevir, PDB code: 3su3 was solved by C.A.Schiffer, K.P.Romano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.38 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.095, 58.461, 60.250, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 18.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of NS3/4A Protease in Complex with Vaniprevir (pdb code 3su3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of NS3/4A Protease in Complex with Vaniprevir, PDB code: 3su3:

Zinc binding site 1 out of 1 in 3su3

Go back to Zinc Binding Sites List in 3su3
Zinc binding site 1 out of 1 in the Crystal Structure of NS3/4A Protease in Complex with Vaniprevir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of NS3/4A Protease in Complex with Vaniprevir within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn4

b:15.3
occ:1.00
ND1 A:HIS1149 2.3 16.6 1.0
SG A:CYS1099 2.3 15.6 1.0
SG A:CYS1145 2.3 13.2 1.0
SG A:CYS1097 2.4 13.3 1.0
CB A:CYS1099 3.2 14.6 1.0
CG A:HIS1149 3.2 16.3 1.0
CE1 A:HIS1149 3.2 18.0 1.0
CB A:CYS1145 3.3 11.2 1.0
CB A:CYS1097 3.3 12.6 1.0
CB A:HIS1149 3.4 13.7 1.0
CA A:CYS1097 3.8 13.1 1.0
N A:CYS1099 3.9 14.0 1.0
CA A:CYS1099 4.1 15.0 1.0
N A:THR1098 4.2 14.6 1.0
NE2 A:HIS1149 4.3 20.8 1.0
CD2 A:HIS1149 4.3 18.3 1.0
C A:CYS1097 4.4 14.2 1.0
CB A:ALA1147 4.6 16.7 1.0
CA A:HIS1149 4.6 12.8 1.0
N A:HIS1149 4.7 13.1 1.0
CA A:CYS1145 4.8 11.5 1.0
O A:HOH72 4.8 27.0 1.0
O A:HOH166 4.9 30.6 1.0
C A:THR1098 5.0 15.2 1.0

Reference:

K.P.Romano, A.Ali, C.Aydin, D.Soumana, A.Ozen, L.M.Deveau, C.Silver, H.Cao, A.Newton, C.J.Petropoulos, W.Huang, C.A.Schiffer. The Molecular Basis of Drug Resistance Against Hepatitis C Virus NS3/4A Protease Inhibitors. Plos Pathog. V. 8 02832 2012.
ISSN: ISSN 1553-7366
PubMed: 22910833
DOI: 10.1371/JOURNAL.PPAT.1002832
Page generated: Wed Dec 16 04:50:51 2020

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