Zinc in PDB 3s2j: Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala

The structure of Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala, PDB code: 3s2j was solved by A.A.Fedorov, E.V.Fedorov, J.Cummings, F.M.Raushel, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.18 / 1.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	97.043, 97.043, 104.962, 90.00, 90.00, 120.00
R / Rfree (%)	17.1 / 17.7

The binding sites of Zinc atom in the Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala (pdb code 3s2j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala, PDB code: 3s2j:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:13.3 occ:1.00 OD2 A:ASP22 2.1 14.0 1.0 OE1 A:GLU123 2.1 13.7 1.0 NE2 A:HIS20 2.1 12.1 1.0 O31 A:L3A401 2.1 14.7 1.0 N1 A:L3A401 2.2 14.7 1.0 CG A:ASP22 2.8 12.7 1.0 OD1 A:ASP22 2.8 13.1 1.0 CD A:GLU123 2.9 13.0 1.0 P A:L3A401 3.0 14.7 1.0 C2 A:L3A401 3.0 14.4 1.0 CE1 A:HIS20 3.1 12.6 1.0 CD2 A:HIS20 3.1 12.8 1.0 OE2 A:GLU123 3.1 13.9 1.0 ZN A:ZN403 3.6 14.1 1.0 O32 A:L3A401 3.7 18.1 1.0 OD1 A:ASP320 3.9 13.7 1.0 OG A:SER66 3.9 12.0 1.0 ND1 A:HIS20 4.2 12.2 1.0 NE2 A:HIS212 4.2 12.3 1.0 CB A:ASP22 4.2 13.1 1.0 CG A:HIS20 4.2 11.2 1.0 CB A:TYR68 4.4 12.6 1.0 CG A:GLU123 4.4 12.4 1.0 C1 A:L3A401 4.5 17.1 1.0 CB A:SER66 4.5 13.6 1.0 C4 A:L3A401 4.6 16.0 1.0 CG A:TYR68 4.6 11.6 1.0 CE1 A:HIS212 4.7 13.2 1.0 CB A:GLU123 4.8 12.6 1.0 CD1 A:TYR68 4.9 13.8 1.0 CD2 A:HIS212 5.0 12.6 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn403 b:14.1 occ:1.00 NE2 A:HIS191 2.0 13.8 1.0 OE2 A:GLU123 2.1 13.9 1.0 NE2 A:HIS212 2.1 12.3 1.0 O32 A:L3A401 2.2 18.1 1.0 O62 A:L3A401 2.3 15.2 1.0 O31 A:L3A401 2.5 14.7 1.0 P A:L3A401 2.9 14.7 1.0 CD2 A:HIS191 3.0 13.5 1.0 CE1 A:HIS191 3.0 12.8 1.0 CE1 A:HIS212 3.0 13.2 1.0 CD2 A:HIS212 3.1 12.6 1.0 C6 A:L3A401 3.1 16.4 1.0 CD A:GLU123 3.2 13.0 1.0 ZN A:ZN402 3.6 13.3 1.0 O61 A:L3A401 3.8 18.2 1.0 NH2 A:ARG223 3.8 14.1 1.0 OE1 A:GLU123 3.8 13.7 1.0 C4 A:L3A401 3.9 16.0 1.0 C5 A:L3A401 4.0 21.3 1.0 NE2 A:HIS20 4.1 12.1 1.0 ND1 A:HIS191 4.1 13.7 1.0 CG A:HIS191 4.2 12.2 1.0 NE2 A:HIS150 4.2 13.9 1.0 ND1 A:HIS212 4.2 12.6 1.0 CG A:HIS212 4.2 12.3 1.0 CD2 A:HIS150 4.2 13.3 1.0 CG A:GLU123 4.4 12.4 1.0 C2 A:L3A401 4.4 14.4 1.0 N1 A:L3A401 4.5 14.7 1.0 OD1 A:ASP320 4.5 13.7 1.0 CZ A:ARG223 4.6 13.3 1.0 CD2 A:HIS20 4.6 12.8 1.0 CE1 A:HIS20 4.7 12.6 1.0 NE A:ARG223 4.8 13.2 1.0

A.A.Fedorov, E.V.Fedorov, J.Cummings, F.M.Raushel, S.C.Almo. Crystal Structure of Dipeptidase From Streptomyces Coelicolor Complexed with Phosphinate Pseudodipeptide L-Leu-D-Ala To Be Published.