Atomistry » Zinc » PDB 3rx8-3s2m » 3s1l
Atomistry »
  Zinc »
    PDB 3rx8-3s2m »
      3s1l »

Zinc in PDB 3s1l: Crystal Structure of Apo-Form Furx

Protein crystallography data

The structure of Crystal Structure of Apo-Form Furx, PDB code: 3s1l was solved by R.Hayes, E.J.Sanchez, B.N.Webb, T.Hooper, M.S.Nissen, Q.Li, L.Xun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.49 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 65.461, 67.880, 84.686, 76.49, 76.96, 86.30
R / Rfree (%) 18.3 / 22.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Apo-Form Furx (pdb code 3s1l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of Apo-Form Furx, PDB code: 3s1l:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 3s1l

Go back to Zinc Binding Sites List in 3s1l
Zinc binding site 1 out of 8 in the Crystal Structure of Apo-Form Furx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Apo-Form Furx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:26.7
occ:1.00
 SG A:CYS102 2.4 22.2 1.0
SG A:CYS99 2.4 24.2 1.0
SG A:CYS110 2.4 27.3 1.0
SG A:CYS96 2.5 28.5 1.0
CB A:CYS99 3.2 26.9 1.0
CB A:CYS110 3.3 23.7 1.0
CB A:CYS102 3.4 24.8 1.0
CB A:CYS96 3.6 32.5 1.0
N A:CYS96 3.6 24.2 1.0
N A:GLY97 3.7 27.4 1.0
N A:CYS99 3.8 26.7 1.0
CA A:CYS96 4.0 30.9 1.0
CA A:CYS99 4.1 22.6 1.0
CA A:CYS110 4.1 24.8 1.0
N A:CYS102 4.3 21.7 1.0
C A:CYS96 4.3 34.6 1.0
O A:HOH384 4.4 31.2 1.0
CA A:CYS102 4.4 24.7 1.0
N A:TYR98 4.5 25.4 1.0
CB A:ALA95 4.5 22.7 1.0
C A:ALA95 4.7 26.7 1.0
CA A:GLY97 4.7 28.1 1.0
C A:CYS99 4.8 26.8 1.0
O A:HOH460 4.8 41.6 1.0
O A:CYS99 4.9 23.6 1.0
C A:CYS110 5.0 28.6 1.0

Zinc binding site 2 out of 8 in 3s1l

Go back to Zinc Binding Sites List in 3s1l
Zinc binding site 2 out of 8 in the Crystal Structure of Apo-Form Furx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Apo-Form Furx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:28.7
occ:1.00
 OE2 A:GLU66 2.0 24.6 1.0
NE2 A:HIS65 2.1 29.4 1.0
SG A:CYS42 2.3 28.9 1.0
SG A:CYS152 2.4 25.7 1.0
CD2 A:HIS65 3.0 25.9 1.0
CE1 A:HIS65 3.1 28.8 1.0
CD A:GLU66 3.1 22.2 1.0
CB A:CYS152 3.2 21.4 1.0
CB A:CYS42 3.3 26.5 1.0
NH2 A:ARG335 3.6 30.0 1.0
CG A:GLU66 3.6 22.7 1.0
CG A:HIS65 4.1 24.7 1.0
ND1 A:HIS65 4.1 27.8 1.0
OE1 A:GLU66 4.2 24.1 1.0
O A:HOH355 4.2 26.2 1.0
O A:HOH453 4.4 37.5 1.0
CA A:CYS42 4.4 26.8 1.0
N A:CYS42 4.5 25.3 1.0
C6 A:P6G600 4.6 40.9 1.0
CB A:THR44 4.6 31.2 1.0
CA A:CYS152 4.7 20.0 1.0
OG1 A:THR44 4.7 34.1 1.0
CZ A:ARG335 4.8 25.6 1.0
O A:HOH753 4.8 38.4 1.0
O7 A:P6G600 5.0 38.5 1.0

Zinc binding site 3 out of 8 in 3s1l

Go back to Zinc Binding Sites List in 3s1l
Zinc binding site 3 out of 8 in the Crystal Structure of Apo-Form Furx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Apo-Form Furx within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn500

b:27.1
occ:1.00
 SG B:CYS110 2.4 26.9 1.0
SG B:CYS102 2.4 25.8 1.0
SG B:CYS96 2.4 27.7 1.0
SG B:CYS99 2.4 25.0 1.0
CB B:CYS110 3.2 25.0 1.0
CB B:CYS99 3.4 27.1 1.0
CB B:CYS102 3.5 27.5 1.0
CB B:CYS96 3.5 31.3 1.0
N B:CYS96 3.6 25.1 1.0
N B:GLY97 3.7 30.2 1.0
N B:CYS99 3.8 25.9 1.0
CA B:CYS96 3.9 28.6 1.0
CA B:CYS110 4.1 26.2 1.0
O B:HOH377 4.1 24.7 1.0
CA B:CYS99 4.2 25.7 1.0
C B:CYS96 4.2 32.1 1.0
N B:CYS102 4.4 23.8 1.0
N B:TYR98 4.4 25.2 1.0
CA B:CYS102 4.5 25.4 1.0
CB B:ALA95 4.6 27.7 1.0
C B:ALA95 4.7 29.1 1.0
CA B:GLY97 4.7 28.2 1.0
O B:HOH418 4.8 35.1 1.0
C B:CYS99 4.9 27.8 1.0
O B:CYS99 4.9 25.4 1.0
C B:GLY97 4.9 33.9 1.0
C B:TYR98 5.0 30.5 1.0
C B:CYS110 5.0 24.7 1.0

Zinc binding site 4 out of 8 in 3s1l

Go back to Zinc Binding Sites List in 3s1l
Zinc binding site 4 out of 8 in the Crystal Structure of Apo-Form Furx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Apo-Form Furx within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:25.9
occ:1.00
 OE2 B:GLU66 2.0 24.5 1.0
NE2 B:HIS65 2.1 25.4 1.0
SG B:CYS152 2.4 25.6 1.0
SG B:CYS42 2.4 24.7 1.0
CD2 B:HIS65 3.0 26.4 1.0
CE1 B:HIS65 3.1 25.5 1.0
CD B:GLU66 3.1 23.4 1.0
CB B:CYS152 3.2 22.1 1.0
CB B:CYS42 3.4 25.4 1.0
CG B:GLU66 3.6 21.4 1.0
NH2 B:ARG335 3.6 24.0 1.0
CG B:HIS65 4.1 22.3 1.0
ND1 B:HIS65 4.1 23.8 1.0
OE1 B:GLU66 4.2 25.1 1.0
O B:HOH440 4.2 38.0 1.0
O B:HOH371 4.3 25.1 1.0
CA B:CYS42 4.5 24.5 1.0
N B:CYS42 4.6 26.5 1.0
CA B:CYS152 4.6 19.9 1.0
CZ B:ARG335 4.8 29.4 1.0
CB B:THR44 4.8 28.7 1.0
O7 B:P6G600 4.8 44.2 1.0
C6 B:P6G600 4.9 40.7 1.0
OG1 B:THR44 5.0 28.6 1.0

Zinc binding site 5 out of 8 in 3s1l

Go back to Zinc Binding Sites List in 3s1l
Zinc binding site 5 out of 8 in the Crystal Structure of Apo-Form Furx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Apo-Form Furx within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn500

b:23.9
occ:1.00
 SG C:CYS110 2.4 21.0 1.0
SG C:CYS96 2.4 27.4 1.0
SG C:CYS99 2.4 20.4 1.0
SG C:CYS102 2.4 21.7 1.0
CB C:CYS110 3.2 19.6 1.0
CB C:CYS99 3.3 21.4 1.0
CB C:CYS102 3.4 21.4 1.0
CB C:CYS96 3.5 24.9 1.0
N C:CYS96 3.6 21.9 1.0
N C:GLY97 3.7 22.9 1.0
N C:CYS99 3.9 23.6 1.0
CA C:CYS96 3.9 24.8 1.0
CA C:CYS110 4.0 20.2 1.0
O C:HOH348 4.2 24.1 1.0
CA C:CYS99 4.2 26.5 1.0
C C:CYS96 4.3 27.7 1.0
N C:CYS102 4.3 21.8 1.0
CA C:CYS102 4.5 26.9 1.0
N C:TYR98 4.5 25.5 1.0
CB C:ALA95 4.6 20.9 1.0
C C:ALA95 4.7 25.0 1.0
O C:HOH447 4.7 29.9 1.0
CA C:GLY97 4.7 24.8 1.0
O C:HOH611 4.8 41.0 1.0
C C:CYS110 4.9 24.7 1.0
C C:CYS99 4.9 23.5 1.0

Zinc binding site 6 out of 8 in 3s1l

Go back to Zinc Binding Sites List in 3s1l
Zinc binding site 6 out of 8 in the Crystal Structure of Apo-Form Furx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Apo-Form Furx within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn501

b:30.4
occ:1.00
 OE2 C:GLU66 2.1 27.2 1.0
NE2 C:HIS65 2.2 31.1 1.0
SG C:CYS42 2.3 28.4 1.0
SG C:CYS152 2.4 26.8 1.0
CE1 C:HIS65 3.1 29.9 1.0
CD2 C:HIS65 3.1 22.8 1.0
CD C:GLU66 3.2 31.4 1.0
CB C:CYS152 3.2 24.3 1.0
CB C:CYS42 3.3 31.9 1.0
NH2 C:ARG335 3.7 33.0 1.0
O1 C:P6G600 3.7 56.2 1.0
CG C:GLU66 3.7 31.0 1.0
ND1 C:HIS65 4.1 27.8 1.0
CG C:HIS65 4.2 23.0 1.0
OE1 C:GLU66 4.2 28.9 1.0
O C:HOH363 4.3 25.8 1.0
O C:HOH395 4.4 44.2 1.0
CA C:CYS42 4.5 31.2 1.0
N C:CYS42 4.5 28.5 1.0
CA C:CYS152 4.7 25.8 1.0
CB C:THR44 4.7 32.9 1.0
CZ C:ARG335 4.8 30.6 1.0
OG1 C:THR44 5.0 31.8 1.0
C2 C:P6G600 5.0 45.5 1.0

Zinc binding site 7 out of 8 in 3s1l

Go back to Zinc Binding Sites List in 3s1l
Zinc binding site 7 out of 8 in the Crystal Structure of Apo-Form Furx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Apo-Form Furx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn500

b:25.2
occ:1.00
 SG D:CYS99 2.4 24.1 1.0
SG D:CYS102 2.4 24.7 1.0
SG D:CYS110 2.4 25.7 1.0
CB D:CYS96 2.5 17.5 1.0
SG D:CYS96 2.8 69.7 1.0
N D:CYS96 3.2 27.6 1.0
CB D:CYS110 3.3 21.4 1.0
CB D:CYS99 3.3 28.2 1.0
CA D:CYS96 3.4 33.9 1.0
CB D:CYS102 3.5 23.9 1.0
N D:CYS99 3.8 24.6 1.0
N D:GLY97 3.9 26.2 1.0
CA D:CYS110 4.0 24.6 1.0
CA D:CYS99 4.1 23.6 1.0
C D:CYS96 4.2 35.0 1.0
O D:HOH364 4.2 29.2 1.0
N D:CYS102 4.3 25.8 1.0
C D:ALA95 4.4 24.1 1.0
CB D:ALA95 4.5 22.5 1.0
CA D:CYS102 4.5 24.7 1.0
N D:TYR98 4.5 24.3 1.0
C D:CYS99 4.8 25.5 1.0
O D:HOH406 4.8 32.3 1.0
O D:HOH469 4.9 48.9 1.0
CA D:ALA95 4.9 25.6 1.0
C D:CYS110 4.9 28.2 1.0
C D:TYR98 5.0 31.6 1.0

Zinc binding site 8 out of 8 in 3s1l

Go back to Zinc Binding Sites List in 3s1l
Zinc binding site 8 out of 8 in the Crystal Structure of Apo-Form Furx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Apo-Form Furx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn501

b:35.7
occ:1.00
 OE2 D:GLU66 2.1 36.8 1.0
NE2 D:HIS65 2.3 34.0 1.0
SG D:CYS42 2.3 37.2 1.0
SG D:CYS152 2.4 32.2 1.0
CD2 D:HIS65 3.0 31.7 1.0
CB D:CYS152 3.2 29.2 1.0
CD D:GLU66 3.2 34.8 1.0
CE1 D:HIS65 3.2 37.8 1.0
CB D:CYS42 3.3 36.4 1.0
NH2 D:ARG335 3.6 39.6 1.0
CG D:GLU66 3.6 35.0 1.0
CG D:HIS65 4.1 34.0 1.0
ND1 D:HIS65 4.2 29.5 1.0
OE1 D:GLU66 4.3 35.6 1.0
O D:HOH391 4.3 35.8 1.0
CA D:CYS42 4.5 38.1 1.0
N D:CYS42 4.6 34.0 1.0
CA D:CYS152 4.6 27.4 1.0
CZ D:ARG335 4.7 34.1 1.0
O7 D:P6G600 4.8 46.2 1.0
C6 D:P6G600 4.8 52.2 1.0
CB D:THR44 4.8 39.0 1.0

Reference:

C.Kang, R.Hayes, E.J.Sanchez, B.N.Webb, Q.Li, T.Hooper, M.S.Nissen, L.Xun. Furfural Reduction Mechanism of A Zinc-Dependent Alcohol Dehydrogenase From Cupriavidus Necator JMP134. Mol.Microbiol. V. 83 85 2012.
ISSN: ISSN 0950-382X
PubMed: 22081946
DOI: 10.1111/J.1365-2958.2011.07914.X
Page generated: Wed Dec 16 04:48:42 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy